DNA Mechanics and Gene Expression

Presentations

• Prof. Yann Chemla (University of Illinois Urbana-Champaign)

  ORAL · Invited

  March 7, 2024, 3:00 PM – March 7, 2024, 3:36 PM

  Presenters

  • Yann R Chemla

    • University of Illinois at Urbana-Champaign

  Authors

  • Yann R Chemla

    • University of Illinois at Urbana-Champaign

  View abstract →

• Probing the anisotropic bendability of double-stranded DNA

  ORAL

  March 7, 2024, 3:36 PM – March 7, 2024, 3:48 PM

  Presenters

  • Harold D Kim

    • Georgia Institute of Technology

  Authors

  • Harold D Kim

    • Georgia Institute of Technology

  • Michael L Ryan

    • Georgia Institute of Technology

  View abstract →

• The surprising ways in which macromolecular crowders affect DNA structure and topology

  ORAL

  March 7, 2024, 3:48 PM – March 7, 2024, 4:00 PM

  Publication: Jin Qian, Zachary Zinzan Montgomery, Wenxuan Xu, Andrew Spakowitz, David Dunlap and Laura Finzi, "Macromolecular crowders: influencers of DNA structure and topology", planned.

  Presenters

  • Laura Finzi

    • Emory University

  Authors

  • Laura Finzi

    • Emory University

  • David D Dunlap

    • Emory University

  • Jin Qian

    • Emory University

  • Zachary Z Montgomery

    • Stanford University

  • Andrew Spakowitz

    • Stanford University

  View abstract →

• Controlling gene expression timing through gene regulatory architecture

  ORAL

  March 7, 2024, 4:00 PM – March 7, 2024, 4:12 PM

  Publication: Ali MZ, Brewster RC (2022) Controlling gene expression timing through gene regulatory architecture. PLOS Computational Biology 18(1): e1009745. https://doi.org/10.1371/journal.pcbi.1009745

  Presenters

  • MD ZULFIKAR ALI

    • University of Southern Indiana

  Authors

  • MD ZULFIKAR ALI

    • University of Southern Indiana

  • Robert C Brewster

    • University of Massachusetts Medical School

  View abstract →

• Maximum entropy models for patterns of gene expression

  ORAL

  March 7, 2024, 4:12 PM – March 7, 2024, 4:24 PM

  Presenters

  • Camilla Sarra

    • Princeton University

  Authors

  • Camilla Sarra

    • Princeton University

  • William S Bialek

    • Princeton University

  View abstract →

• Prof. Sua Myong (Johns Hopkins University)

  ORAL · Invited

  March 7, 2024, 4:24 PM – March 7, 2024, 5:00 PM

  Presenters

  • Sua Myong

    • Johns Hopkins University

  Authors

  • Sua Myong

    • Johns Hopkins University

  View abstract →

• Supercoiling-mediated feedback rapidly couples and tunes transcription​ in mammalian cells

  ORAL

  March 7, 2024, 5:00 PM – March 7, 2024, 5:12 PM

  Publication: C. P. Johnstone and K. E. Galloway, Supercoiling-Mediated Feedback Rapidly Couples and Tunes Transcription, Cell Reports 41, (2022).

  Presenters

  • Christopher Johnstone

    • Massachusetts Institute of Technology

  Authors

  • Christopher Johnstone

    • Massachusetts Institute of Technology

  • Kate Galloway

    • Massachusetts Institute of Technology

  View abstract →

• Regulation of chromatin transcription via DNA supercoiling

  ORAL

  March 7, 2024, 5:12 PM – March 7, 2024, 5:24 PM

  Presenters

  • Sumitabha Brahmachari

    • Rice University

  Authors

  • Sumitabha Brahmachari

    • Rice University

  • Shubham Tripathi

    • Yale University

  • Jose N Onuchic

    • Rice University

  • Herbert Levine

    • Northeastern University

  View abstract →

• Stochastic nucleosome disassembly mediated by remodelers and histone fragmentation

  ORAL

  March 7, 2024, 5:24 PM – March 7, 2024, 5:36 PM

  Publication: preprint by the same title at arXiv:2309.02736 [q-bio.BM]

  Presenters

  • Xiangting Li

    • University of California, Los Angeles

  Authors

  • Xiangting Li

    • University of California, Los Angeles

  • Tom Chou

    • University of California, Los Angeles

  View abstract →

• AMPK regulates chromatin dynamics and structure through LaminA

  ORAL

  March 7, 2024, 5:36 PM – March 7, 2024, 5:48 PM

  Presenters

  • Fadil Iqbal

    • Indiana University - Purdue University Indianapolis

  Authors

  • Fadil Iqbal

    • Indiana University - Purdue University Indianapolis

  View abstract →

• Modeling the Origin of Long-Range Correlation of DNA Methylation in Chromosomal DNA

  ORAL

  March 7, 2024, 5:48 PM – March 7, 2024, 6:00 PM

  Presenters

  • Ariana Tse

    • Stanford University

  Authors

  • Ariana Tse

    • Stanford University

  • Andrew Spakowitz

    • Stanford University

  View abstract →