Physics of Proteins: Structure and Dynamics

Presentations

• In vivo protein dynamics

  ORAL · Invited

  March 7, 2024, 3:00 PM – March 7, 2024, 3:36 PM

  Presenters

  • Martin D Gruebele

    • University of Illinois

  Authors

  • Martin D Gruebele

    • University of Illinois

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• Graph Neural Networks as Protein-Protein Interface Scoring Functions

  ORAL

  March 7, 2024, 3:36 PM – March 7, 2024, 3:48 PM

  Presenters

  • Naomi Brandt

    • Yale University

  Authors

  • Naomi Brandt

    • Yale University

  • Jake Sumner

    • Yale University

  • Alex T Grigas

    • Yale University

  • Corey S O'Hern

    • Yale University

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• Probing Dynamics of Transferrin and their Interaction with Metal Ions using High Sensitivity Dielectric Spectroscopy

  ORAL

  March 7, 2024, 3:48 PM – March 7, 2024, 4:00 PM

  Presenters

  • Jiarong R Cui

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061, USA

  Authors

  • Jiarong R Cui

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061, USA

  • Nathan Peters

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061, USA

  • Vinh Q Nguyen

    • Virginia Tech
    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061, USA

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• Modeling Flexible Docking of Protein Monomers using Rigid-body Docking along Minimal Energy Paths

  ORAL

  March 7, 2024, 4:00 PM – March 7, 2024, 4:12 PM

  Presenters

  • Devon Finlay

    • Yale University

  Authors

  • Devon Finlay

    • Yale University

  • Grace Meng

    • Yale University

  • Alex T Grigas

    • Yale University

  • Corey S O'Hern

    • Yale University

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• Oral: How to "see" proton transfer during protein function using signature vibrational modes?

  ORAL

  March 7, 2024, 4:12 PM – March 7, 2024, 4:24 PM

  Publication: Planned paper: "Infrared structural biology: probe the protonation states of buried and exposed histidine residues in proteins with atomic sensitivity of protons."

  Presenters

  • Aihua Xie

    • Oklahoma State University

  Authors

  • Aihua Xie

    • Oklahoma State University

  • Rosalie Dohmen

    • Oklahoma State University

  • Wouter Hoff

    • Oklahoma State University
    • Oklahoma State University-Stillwater

  • Salma Priya

    • Oklahoma State University

  • Sarah Teeman

    • Oklahoma State University

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• Protein cores explore a glassy energy landscape

  ORAL

  March 7, 2024, 4:24 PM – March 7, 2024, 4:36 PM

  Presenters

  • Alex T Grigas

    • Yale University

  Authors

  • Alex T Grigas

    • Yale University

  • Jack Logan

    • Yale University

  • Mark D Shattuck

    • The City College of New York

  • Corey S O'Hern

    • Yale University

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• Rotational Effects on Free Energy Landscapes of Diffusing Molecules in Coarse-Grained Models

  ORAL

  March 7, 2024, 4:36 PM – March 7, 2024, 4:48 PM

  Presenters

  • Jesse M Hall

    • University of Oregon

  Authors

  • Jesse M Hall

    • University of Oregon

  • Marina G Guenza

    • University of Oregon

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• Functionalization for Graphene-based Field Effect Transistor Biosensors

  ORAL

  March 7, 2024, 4:48 PM – March 7, 2024, 5:00 PM

  Presenters

  • Leslie Howe

    • Virginia Tech

  Authors

  • Leslie Howe

    • Virginia Tech

  • Tharindu D Rajapaksha

    • Virginia Tech

  • Kalani H Ellepola

    • Virginia Tech

  • Ellee Pyle

    • Virginia Tech

  • Zachary Aycock

    • Virginia Tech

  • Vinh Q Nguyen

    • Virginia Tech
    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061, USA

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• The minimum and optimal restraints in FRET-assisted protein structural modeling

  ORAL

  March 7, 2024, 5:00 PM – March 7, 2024, 5:12 PM

  Presenters

  • Zhuoyi Liu

    • Yale University

  Authors

  • Zhuoyi Liu

    • Yale University

  • Alex T Grigas

    • Yale University

  • Jake Sumner

    • Yale University

  • Edward Knab

    • Yale University

  • Caitlin Davis

    • Yale University

  • Corey S O'Hern

    • Yale University

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• Investigation of GapR protein-mediated DNA softening and supercoiling using magnetic tweezers

  ORAL

  March 7, 2024, 5:12 PM – March 7, 2024, 5:24 PM

  Presenters

  • Xinjue Wei

    • northwestern university

  Authors

  • Xinjue Wei

    • northwestern university

  • John F Marko

    • Northwestern University

  • Ryo kawamura

    • Northwestern University

  • Monica S Guo

    • University of Washington

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• Molecular docking and dynamics of flexible heteroarotinoids as potential inhibitors against SARS-CoV-2 proteins .

  ORAL

  March 7, 2024, 5:24 PM – March 7, 2024, 5:36 PM

  Presenters

  • Sujan Timsina

    • Oklahoma State University-Stillwater

  Authors

  • Sujan Timsina

    • Oklahoma State University-Stillwater

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• Assessing the current state of computational models for protein-protein interfaces

  ORAL

  March 7, 2024, 5:36 PM – March 7, 2024, 5:48 PM

  Presenters

  • Jake Sumner

    • Yale University

  Authors

  • Jake Sumner

    • Yale University

  • Grace Meng

    • Yale University

  • Naomi Brandt

    • Yale University

  • Andrés Córdoba

    • Duke University

  • Alex T Grigas

    • Yale University

  • Lynne Regan

    • University of Edinburgh

  • Corey S O'Hern

    • Yale University

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