Morphogenesis II

Presentations

• Statistical machine learning for learning representations of embryonic development

  ORAL · Invited

  March 5, 2024, 3:00 PM – March 5, 2024, 3:36 PM

  Publication: 1) A computational pipeline for spatial mechano-transcriptomics (submitted manuscript, under review)
  Adrien Hallou, Ruiyang He, Benjamin D. Simons, Bianca Dumitrascu
  2) Learning spatial and temporal representations of developing embryos and organs (to be submitted)
  Jiawei Wang, Jinzheng Ren, James Sharpe, Bianca Dumitrascu# and John Marioni#

  Presenters

  • Bianca Dumitrascu

    • Columbia University

  Authors

  • Bianca Dumitrascu

    • Columbia University

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• TubULAR: Tracking in toto deformations of dynamic tissues via constrained maps

  ORAL

  March 5, 2024, 3:36 PM – March 5, 2024, 3:48 PM

  Publication: Mitchell & Cislo. "TubULAR: Tracking in toto deformations of dynamic tissues via constrained maps." Nature Methods (accepted)

  Presenters

  • Noah P Mitchell

    • University of California, Santa Barbara

  Authors

  • Noah P Mitchell

    • University of California, Santa Barbara

  • Dillon J Cislo

    • University of California, Santa Barbara

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• Distinguishing between stereotyped patterns and developmental noise in Drosophila wing cell sizes

  ORAL

  March 5, 2024, 3:48 PM – March 5, 2024, 4:00 PM

  Presenters

  • Avik B Mondal

    • University of Michigan

  Authors

  • Avik B Mondal

    • University of Michigan

  • Daniel McCusker

    • University of Michigan

  • Dalmiro Blanco-Obregon

    • Institut Curie, SL Research University

  • Pierre Leopold

    • Institut Curie, PSL Research University

  • David K Lubensky

    • University of Michigan

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• Local and collective cellular forces driving neural tube closure

  ORAL

  March 5, 2024, 4:00 PM – March 5, 2024, 4:12 PM

  Presenters

  • Fernanda L Pérez Verdugo

    • Carnegie Mellon University

  Authors

  • Fernanda L Pérez Verdugo

    • Carnegie Mellon University

  • Eirini Maniou

    • University of Padova

  • Gabriel L Galea

    • University College London

  • Shiladitya Banerjee

    • Carnegie Mellon University

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• Direct application of tissue-scale tension to epithelia reveals mechanical coupling of germ layers and multi-scale mechanical properties in the developing chick embryo

  ORAL

  March 5, 2024, 4:12 PM – March 5, 2024, 4:24 PM

  Presenters

  • Panagiotis Oikonomou

    • Columbia University

  Authors

  • Panagiotis Oikonomou

    • Columbia University

  • Lisa M Calvary

    • Columbia University

  • Helena C Cirne

    • Columbia University

  • Andreas E Welch

    • Columbia University

  • Nandan L Nerurkar

    • Columbia University

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• Bilateral cellular flows initiate left-right asymmetry during early gastrulation in amniotes.

  ORAL

  March 5, 2024, 4:24 PM – March 5, 2024, 4:36 PM

  Presenters

  • Shubham Sinha

    • University of Miami

  Authors

  • Shubham Sinha

    • University of Miami

  • Rieko Asai

    • Cardiovascular Research Institute, University of California, San Francisco

  • Vivek Prakash

    • University of Miami

  • Takashi Mikawa

    • Cardiovascular Research Institute, University of California, San Francisco

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• Mechanical and molecular self-organization principles in chick gastrulation

  ORAL · Invited

  March 5, 2024, 4:36 PM – March 5, 2024, 5:12 PM

  Publication: -Serra, M., et al. "A mechanochemical model recapitulates distinct vertebrate gastrulation modes." Science Advances, Accepted (2023).
  -Chuai, M., et al. "Reconstruction of distinct vertebrate gastrulation modes via modulation of key cell behaviors in the chick embryo." Science Advances 9.1 (2023).

  Presenters

  • Mattia Serra

    • University of California San Diego
    • UCSD

  Authors

  • Mattia Serra

    • University of California San Diego
    • UCSD

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• A mechano-chemical mechanism for symmetry breaking and patterning of the early chick embryo

  ORAL

  March 5, 2024, 5:12 PM – March 5, 2024, 5:24 PM

  Presenters

  • Sreejith Santhosh

    • University of California San Diego

  Authors

  • Sreejith Santhosh

    • University of California San Diego

  • Manli Chuai

    • College of Life Sciences, University of Dundee

  • Cornelis J Weijer

    • University of Dundee
    • College of Life Sciences, University of Dundee

  • Mattia Serra

    • University of California San Diego
    • UCSD

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• Embryonic area homeostasis in avian gastrulation

  ORAL

  March 5, 2024, 5:24 PM – March 5, 2024, 5:36 PM

  Presenters

  • Alex M Plum

    • University of California San Diego

  Authors

  • Alex M Plum

    • University of California San Diego

  • Guillermo Serrano-Najera

    • University of Cambridge

  • Cornelis J Weijer

    • University of Dundee
    • College of Life Sciences, University of Dundee

  • Mattia Serra

    • University of California San Diego
    • UCSD

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• Low dimensionality of phenotypic space as an emergent property of coordinated teams in biological regulatory networks

  ORAL

  March 5, 2024, 5:36 PM – March 5, 2024, 5:48 PM

  Publication: https://www.biorxiv.org/content/10.1101/2023.02.03.526930v2

  Presenters

  • Anantha Samrajya Shri Kishore Hari

    • Indian Institute Of Science

  Authors

  • Anantha Samrajya Shri Kishore Hari

    • Indian Institute Of Science

  • Mohit Kumar Jolly

    • Indian Institute of Science

  • Pradyumna Harlapur

    • Indian Institute of Science

  • Aashna Saxena

    • Indian Institute of Science

  • Herbert Levine

    • Northeastern University

  • Aishwarya Girish

    • Indian Institute of Science

  • Kushal Haldar

    • IISER Kolkata

  • Tanisha Malpani

    • Indian Institute of Science

  View abstract →