Evolutionary Dynamics I

Presentations

• Dynamics of the CRISPR array

  ORAL · Invited

  March 4, 2024, 11:30 AM – March 4, 2024, 12:06 PM

  Presenters

  • James Q Boedicker

    • USC

  Authors

  • James Q Boedicker

    • USC

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• From epigenetic landscape to genetic assimilation: Revisiting Waddington's experiments

  ORAL

  March 4, 2024, 12:06 PM – March 4, 2024, 12:18 PM

  Publication: Raju A, Xue BK, Leibler S. A theoretical perspective on Waddington's genetic assimilation experiments. PNAS (under review)

  Presenters

  • BingKan Xue

    • University of Florida

  Authors

  • Archishman Raju

    • National Centre for Biological Sciences

  • BingKan Xue

    • University of Florida

  • Stanislas Leibler

    • Rockefeller University and Institute for Advanced Study

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• Quantifying Sample Collection Time Uncertainty Improves Epidemiological Modeling of SARS-CoV-2 Evolution

  ORAL

  March 4, 2024, 12:18 PM – March 4, 2024, 12:30 PM

  Publication: Quantifying Sample Collection Time Uncertainty Improves Epidemiological Modeling of SARS-CoV-2 Evolution - drafted manuscript, to be submitted

  Presenters

  • Elizabeth Finney

    • University of California, Riverside

  Authors

  • Elizabeth Finney

    • University of California, Riverside

  • John P Barton

    • University of Pittsburgh
    • University of Pittsburgh School of Medicine

  • Brian Lee

    • University of California, Riverside

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• Emergent structure enables lab-evolved multicellular organisms to overcome nutrient diffusion limits

  ORAL

  March 4, 2024, 12:30 PM – March 4, 2024, 12:42 PM

  Presenters

  • Emma P Bingham

    • Georgia Institute of Technology

  Authors

  • Emma P Bingham

    • Georgia Institute of Technology

  • William C Ratcliff

    • Georgia Institute of Technology

  • Peter Yunker

    • Georgia Institute of Technology

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• Robustness of collectively encoded genomic information

  ORAL

  March 4, 2024, 12:42 PM – March 4, 2024, 12:54 PM

  Presenters

  • Yoshiya J Matsubara

    • The University of Chicago
    • University of Chicago

  Authors

  • Leon Zhou

    • University of Chicago

  • Martin J Falk

    • University of Chicago

  • Yoshiya J Matsubara

    • The University of Chicago
    • University of Chicago

  • Kabir B Husain

    • University of Chicago

  • Jack W Szostak

    • University of Chicago

  • Arvind Murugan

    • University of Chicago

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• Inferring time-varying selection for HIV escape from T cell responses

  ORAL

  March 4, 2024, 12:54 PM – March 4, 2024, 1:06 PM

  Presenters

  • Yirui Gao

    • Univeristy of california, Riverside

  Authors

  • Yirui Gao

    • Univeristy of california, Riverside

  • Brian Lee

    • University of California, Riverside

  • John P Barton

    • University of Pittsburgh
    • University of Pittsburgh School of Medicine

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• Evolutionary adaptation of dense microbial colonies to surface associated growth

  ORAL

  March 4, 2024, 1:06 PM – March 4, 2024, 1:18 PM

  Presenters

  • Katie E Randolph

    • Cornell University

  Authors

  • Katie E Randolph

    • Cornell University

  • Marco Fumasoni

    • Instituto Gulbenkian de Ciencia

  • Andrea Giometto

    • Cornell

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• Mass Extinctions & Evolutionary Lineages: A Coalescent-Theory Approach in an Agent-Based Model

  ORAL

  March 4, 2024, 1:18 PM – March 4, 2024, 1:30 PM

  Presenters

  • Sonya Bahar

    • UMSL

  Authors

  • Emily Vastola

    • University of Missouri at St. Louis

  • William Hayes

    • University of Missouri at St. Louis

  • Joseph Milliano

    • University of Missouri at St. Louis

  • Tyler Hanke

    • University of Illinois Urbana-Champaign

  • Ian Heye

    • Missouri University of Science and Technology

  • Dawn M King

    • University of Missouri - St. Louis

  • Sonya Bahar

    • UMSL

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• The Prebiotic Emergence of Biological Evolution

  ORAL

  March 4, 2024, 1:30 PM – March 4, 2024, 1:42 PM

  Publication: C. D. Kocher and K. A. Dill, "The prebiotic emergence of biological evolution." Submitted to Phys. Rev. Research.

  Presenters

  • Charles D Kocher

    • Stony Brook University

  Authors

  • Charles D Kocher

    • Stony Brook University

  • Ken A Dill

    • Stony Brook University (SUNY)

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• ​​Population structure, information, and growth in randomly fluctuating environments

  ORAL

  March 4, 2024, 1:42 PM – March 4, 2024, 1:54 PM

  Publication: Antun Skanata, Population structure, information, and growth in randomly fluctuating environments, forthcoming.

  Presenters

  • Antun Skanata

    • Syracuse University

  Authors

  • Antun Skanata

    • Syracuse University

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• Landscape-Enhanced Mutant Survival

  ORAL

  March 4, 2024, 1:54 PM – March 4, 2024, 2:06 PM

  Presenters

  • Jimmy Gonzalez Nunez

    • Johns Hopkins University

  Authors

  • Jimmy Gonzalez Nunez

    • Johns Hopkins University

  • Daniel A Beller

    • Johns Hopkins University

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• Using time-series genomic data for early detection of novel SARS-CoV-2 variants with increased transmissibility

  ORAL

  March 4, 2024, 2:06 PM – March 4, 2024, 2:18 PM

  Publication: https://www.medrxiv.org/content/10.1101/2021.12.31.21268591v1

  Presenters

  • Brian Lee

    • University of California, Riverside

  Authors

  • Brian Lee

    • University of California, Riverside

  View abstract →