Molecular Machines II

FOCUS · Q08 · ID: 1107048

Presentations

  • ORAL · Invited

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    Publication: 1. Unarta, I.S., Cao, S., Kubo, S., Wang, W., Cheung, P.P.H., Gao, X., Takada, S., Huang, X., "Role of Bacterial RNA Polymerase Gate Opening Dynamics in DNA Loading and Antibiotics Inhibition Elucidated by quasi-Markov State Model", Proc. Nat. Acad. Sci. U.S.A., 118(17), e2024324118, (2021)

    2. Tse K.M., Xu, J., Xu, L., Sheong, F.K., Wang, S., Chow, H.Y., Gao, X., Li, X., Cheung, P.P., Wang, D.*, Zhang, Y., Huang, X., "Intrinsic Cleavage of RNA Polymerase II Adopts a Nucleobase-independent Mechanism Assisted by Transcript Phosphate", Nature Catalysis, 2, 228-235, (2019)

    3. Da, L., Pardo, F. , Xu, L., Silva, D. , Zhang, L. , Gao, X., Wang, D., Huang, X., "Bridge Helix Bending Promotes RNA Polymerase II Backtracking Through a Critical and Conserved Threonine Residue", Nature Communications, 7, 11244, (2016)

    Presenters

    • Xuhui Huang

      • University of Wisconsin-Madison

    Authors

    • Xuhui Huang

      • University of Wisconsin-Madison

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  • ORAL

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    Publication: Bhat, D., Hauf, S., Plessy, C., Yokobayashi, Y. and Pigolotti, S., 2022. Speed variations of bacterial replisomes. Elife, 11, p.e75884.

    Presenters

    • Simone Pigolotti

      • Okinawa Institute of Science & Technolog

    Authors

    • Simone Pigolotti

      • Okinawa Institute of Science & Technolog

    • Deepak Bhat

      • Okinawa Institute of Science & Technology

    • Samuel Hauf

      • Okinawa Institute of Science and Technology

    • Charles Plessy

      • Okinawa Institute of Science and Technology

    • Yohei Yokobayashi

      • Okinawa Institute of Science and Technology

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  • ORAL · Invited

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    Publication: Yuly, J. L., Zhang, P., Lubner, C. E., Peters, J. W., & Beratan, D. N. (2020). Proceedings of the National Academy of Sciences, 117(35), 21045-21051.
    Yuly, J. L., Zhang, P., Ru, X., Terai, K., Singh, N., & Beratan, D. N. (2021). Chem, 7(7), 1870-1886.
    Yuly, J.L., Zhang, P., and Beratan, D.N. (2021). Current Opinion in Electrochemistry, 29, 100767.
    Terai, K., Yuly, J.L., Zhang, P., and Beratan, D.N. (2022). Proceedings of the National Academy of Sciences, Submitted.

    Presenters

    • Jonathon L Yuly

      • Princeton University

    Authors

    • Jonathon L Yuly

      • Princeton University

    • Peng Zhang

      • Duke University

    • Kiriko Terai

      • Duke University

    • David N Beratan

      • Duke University

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  • ORAL · Invited

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    Publication: "Chemical-to-mechanical molecular computation using DNA-based motors with onboard logic" Selma Piranej, Alisina Bazrafshan & Khalid Salaita; Nature Nanotechnology volume 17, pages514–523 (2022)
    "Adhesive Dynamics Simulations of Highly Polyvalent DNA Motors" Aaron T. Blanchard, Selma Piranej, Victor Pan, and Khalid Salaita J. Phys. Chem. B 2022, 126, 39, 7495–7509
    "DNA Gold Nanoparticle Motors Demonstrate Processive Motion with Bursts of Speed Up to 50 nm Per Second"Alisina Bazrafshan, Maria-Eleni Kyriazi, Brandon Alexander Holt, Wenxiao Deng, Selma Piranej, Hanquan Su, Yuesong Hu, Afaf H. El-Sagheer, Tom Brown, Gabriel A. Kwong, Antonios G. Kanaras, and Khalid Salaita, ACS Nano, vol. 15 (5), pg. 8427–8438

    Presenters

    • Khalid Salaita

      • Emory University

    Authors

    • Khalid Salaita

      • Emory University

    • Selma Piranej

      • Emory University

    View abstract →