Molecular Machines I

Presentations

• Probing Allosteric Communication of Bacterial ClpP Peptidase using Dynamic Network Analysis and Machine Learning

  ORAL

  March 6, 2023, 3:00 PM – March 6, 2023, 3:12 PM

  Presenters

  • Ashan Dayananda

    • University Of Cincinnati

  Authors

  • Ashan Dayananda

    • University Of Cincinnati

  • Timothy S. H Dennison

    • University of Cincinnati

  • Riina Tehver

    • Denison University

  • George N Stan

    • University of Cincinnati

  View abstract →

• Superdiffusive Motion of Influenza A Viruses on Surfaces

  ORAL

  March 6, 2023, 3:12 PM – March 6, 2023, 3:24 PM

  Presenters

  • Siddhansh Agarwal

    • University of California, Berkeley

  Authors

  • Siddhansh Agarwal

    • University of California, Berkeley

  • Greg Huber

    • Chan Zuckerberg Biohub

  • Daniel A Fletcher

    • University of California, Berkeley

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• Stochastic dynamics and ribosome-RNAP interactions in Transcription-Translation Coupling

  ORAL

  March 6, 2023, 3:24 PM – March 6, 2023, 3:36 PM

  Publication: Li and Chou, Stochastic dynamics and ribosome-RNAP interactions in transcription-translation coupling, Biophysical Journal (2022), https://doi.org/10.1016/j.bpj.2022.09.041

  Presenters

  • Xiangting Li

    • University of California, Los Angeles

  Authors

  • Xiangting Li

    • University of California, Los Angeles

  • Tom Chou

    • University of California, Los Angeles

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• The Mammalian Meiotic Spindle: A Living Material

  ORAL

  March 6, 2023, 3:36 PM – March 6, 2023, 3:48 PM

  Presenters

  • Colm P Kelleher

    • Harvard University

  Authors

  • Colm P Kelleher

    • Harvard University

  • Daniel J Needleman

    • Harvard University

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• Protein remodeling and translocation mediated by AAA+ nanomachines in the degradation and disaggregation pathways: computational studies

  ORAL · Invited

  March 6, 2023, 3:48 PM – March 6, 2023, 4:24 PM

  Presenters

  • George N Stan

    • University of Cincinnati

  Authors

  • George N Stan

    • University of Cincinnati

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• Probing Severing Enzyme's Functional States with Molecular Simulations and Machine Learning Approaches

  ORAL

  March 6, 2023, 4:24 PM – March 6, 2023, 4:36 PM

  Publication: Varikoti, R. A.; Fonseka, H. Y. Y.; Kelly, M. S.; Javidi, A.; Damre, M.; Mullen, S.;
  Nugent, J. L. I.; Gonzales, C. M.; Stan, G.; Dima, R. Exploring the Effect of Mechanical
  Anisotropy of Protein Structures in the Unfoldase Mechanism of AAA+ Molecular
  Machines. nanomaterials 2022, 12

  Presenters

  • Maria S Kelly

    • University of Cincinnati

  Authors

  • Maria S Kelly

    • University of Cincinnati

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• Determining quaternary allostery of the spastin motor through bioinformatics and graph networks

  ORAL

  March 6, 2023, 4:36 PM – March 6, 2023, 4:48 PM

  Presenters

  • Amanda C Macke

    • University Of Cincinnati

  Authors

  • Amanda C Macke

    • University Of Cincinnati

  • Maria S Kelly

    • University of Cincinnati

  • Shehani Kahawatte

    • University of Cincinnati

  • Abigail Miller

    • University of Cincinnati

  • Ruxandra Dima

    • University of Cincinnati

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• Effect of molecular walkers on microtubule substrates

  ORAL

  March 6, 2023, 4:48 PM – March 6, 2023, 5:00 PM

  Presenters

  • Jutta Luettmer-Strathmann

    • University of Akron

  Authors

  • Jutta Luettmer-Strathmann

    • University of Akron

  • Matthew Murrow

    • Vanderbilt University

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• Kinesin Model for Brownian Dynamics Simulations of Stepping Efficiency

  ORAL

  March 6, 2023, 5:00 PM – March 6, 2023, 5:12 PM

  Presenters

  • Matthew Murrow

    • Vanderbilt University

  Authors

  • Matthew Murrow

    • Vanderbilt University

  • Jutta Luettmer-Strathmann

    • University of Akron

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• Inferring subsystem efficiencies in bipartite molecular machines

  ORAL

  March 6, 2023, 5:12 PM – March 6, 2023, 5:24 PM

  Publication: "Inferring Subsystem Efficiencies in Bipartite Molecular Machines", M.P. Leighton, D.A. Sivak, Under Review, Arxiv Preprint: https://arxiv.org/abs/2202.13992.

  Presenters

  • Matthew Leighton

    • Simon Fraser University

  Authors

  • Matthew Leighton

    • Simon Fraser University

  • David A Sivak

    • Simon Fraser University

  View abstract →