Non-Equilibrium Thermodynamics: From Natural Selection to Chemical Reaction Networks

Presentations

• Metabolic constraints in the evolution of biochemical networks

  ORAL · Invited

  March 6, 2023, 8:00 AM – March 6, 2023, 8:36 AM

  Presenters

  • Efe Ilker

    • Max Planck Institute for the Physics of Complex Systems

  Authors

  • Efe Ilker

    • Max Planck Institute for the Physics of Complex Systems

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• From Metabolites to Cells: A Perspective on Non-Equilibrium Thermodynamics

  ORAL · Invited

  March 6, 2023, 8:36 AM – March 6, 2023, 9:12 AM

  Presenters

  • Connah G Johnson

    • Pacific Northwest National Lab

  Authors

  • Connah G Johnson

    • Pacific Northwest National Lab

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• Efficient Two-Dimensional Control of Barrier Crossing

  ORAL

  March 6, 2023, 9:12 AM – March 6, 2023, 9:24 AM

  Publication: Steven Blaber and David A. Sivak Europhys Lett. 139, 17001 (2022)
  https://doi.org/10.1209/0295-5075/ac765d

  Presenters

  • Steven Blaber

    • Simon Fraser University

  Authors

  • Steven Blaber

    • Simon Fraser University

  • David A Sivak

    • Simon Fraser University

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• Stochasticity and Homeostasis in Macromolecular Crowding and its Effects on the Rates of Reproduction

  ORAL

  March 6, 2023, 9:24 AM – March 6, 2023, 9:36 AM

  Publication: S. Nemati, A. Singh, S. D. Dhuey, A. McDonald, D. M. Weinreich, A. E. Vasdekis, Communications Biology 5, 397 (2022).

  Presenters

  • Andreas E Vasdekis

    • University of Idaho

  Authors

  • Andreas E Vasdekis

    • University of Idaho

  • Shahla Nemati

    • University of Idaho

  • Abhyudai Singh

    • University of Delaware

  • Scott Dhuey

    • Lawrence Berkeley National Laboratory

  • Armando McDonald

    • University of Idaho

  • Daniel Weinreich

    • Brown University

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• Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks

  ORAL

  March 6, 2023, 9:36 AM – March 6, 2023, 9:48 AM

  Publication: Wittenstein, Timon, Nava Leibovich, and Andreas Hilfinger. "Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks." PLoS computational biology 18.6 (2022): e1010183. https://doi.org/10.1371/journal.pcbi.1010183

  Presenters

  • Andreas Hilfinger

    • Department of Physics, University of Toronto, Toronto, Canada
    • University of Toronto Mississauga

  Authors

  • Andreas Hilfinger

    • Department of Physics, University of Toronto, Toronto, Canada
    • University of Toronto Mississauga

  • Nava Leibovich

    • University of Toronto

  • Timon Wittenstein

    • University of Mainz

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• How to suppress stochastic fluctuations while achieving adaptation with biologically realistic integral controllers

  ORAL

  March 6, 2023, 9:48 AM – March 6, 2023, 10:00 AM

  Publication: Noise properties of adaptation-conferring biochemical control modules (planned paper in preparation)

  Presenters

  • Brayden J Kell

    • University of Toronto

  Authors

  • Brayden J Kell

    • University of Toronto

  • Andreas Hilfinger

    • Department of Physics, University of Toronto, Toronto, Canada
    • University of Toronto Mississauga

  • Ryan Ripsman

    • University of Toronto

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• Degrading a gradient: information transmission in yeast mating

  ORAL

  March 6, 2023, 10:00 AM – March 6, 2023, 10:12 AM

  Presenters

  • Ryan W LeFebre

    • University of Pittsburgh

  Authors

  • Ryan W LeFebre

    • University of Pittsburgh

  • Joseph Landsittel

    • University of Pittsburgh

  • David Stone

    • University of Illinois - Chicago

  • Andrew Mugler

    • University of Pittsburgh

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• Analysis of the dynamics of the growing and branching network of filamentous fungus Podospora anserina.

  ORAL

  March 6, 2023, 10:12 AM – March 6, 2023, 10:24 AM

  Publication: Dikec, J., Olivier, A., Bobée, C. et al. Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina. Sci Rep 10, 3131 (2020). https://doi.org/10.1038/s41598-020-57808-y
  Ledoux C, Chapeland-Leclerc F, Ruprich-Robert G, Bobée C, Lalanne C, Herbert É, David P. Prediction and experimental evidence of the optimisation of the angular branching process in the thallus growth of Podospora anserina. Sci Rep. 2022 Jul 19;12(1):12351. doi: 10.1038/s41598-022-16245-9. PMID: 35853921; PMCID: PMC9296542.

  Presenters

  • Thibault Chassereau

    • Laboratoire Interdisciplinaire des Energies de Demain

  Authors

  • Thibault Chassereau

    • Laboratoire Interdisciplinaire des Energies de Demain

  • Éric Herbert

    • Université Paris Cité

  • Florence Chapeland-Leclerc

    • Laboratoire Interdisciplinaire des Energies de Demain

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