Molecular Machines II

Presentations

• Global conformational changes and their allosteric control by ubiquitin regulate protein degradation of the 26S proteasome molecular machine

  ORAL · Invited

  March 16, 2022, 11:30 AM – March 16, 2022, 12:06 PM

  Presenters

  • Andreas Martin

    • UC Berkeley

  Authors

  • Andreas Martin

    • UC Berkeley

  • Zaw Htet

    • HHMI, UC Berkeley

  • Erik Jonsson

    • UC Berkeley

  • Erika Lopez-Alfonzo

    • UC Berkeley

  • Ken Dong

    • HHMI, UC Berkeley

  • Jared Bard

    • University of Chicago

  View abstract →

• Asymmetric Conformational Dynamics of the ClpB Disaggregase Nanomachine

  ORAL

  March 16, 2022, 12:06 PM – March 16, 2022, 12:18 PM

  Publication: Damre, Mangesh, Ashan Dayananda, Rohith Anand Varikoti, George Stan, and Ruxandra I. Dima. "Factors underlying asymmetric pore dynamics of disaggregase and microtubule-severing AAA+ machines." Biophysical Journal 120, no. 16 (2021): 3437-3454.

  Presenters

  • Ashan Dayananda

    • University Of Cincinnati

  Authors

  • Ashan Dayananda

    • University Of Cincinnati

  • Ruxandra I Dima

    • University Of Cincinnati

  • George N Stan

    • University Of Cincinnati

  View abstract →

• A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  ORAL

  March 16, 2022, 12:18 PM – March 16, 2022, 12:30 PM

  Publication: Planned Publication: Ayush Saurabh, Oliver Stach, Ioannis Sgouralis, Daniel Nettels, Ben Schuler, and Steve Presse. A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  Presenters

  • Ayush Saurabh

    • Arizona State University

  Authors

  • Ayush Saurabh

    • Arizona State University

  • Steve Presse

    • ASU

  • Ioannis Sgouralis

    • Arizona State University

  View abstract →

• Ambigrammatic Viruses

  ORAL

  March 16, 2022, 12:30 PM – March 16, 2022, 12:42 PM

  Publication: An Exploration of Ambigrammatic Sequences in Narnaviruses,
  J. L. DeRisi, G. Huber, A. Kistler, H. Retallack, M. Wilkinson and D. Yllanes, Sci. Rep., 9, 17982, (2019).
  Polysomally Protected Viruses,
  M. Wilkinson, D. Yllanes and G. Huber, Phys. Biol., 18, 046009, (2021).
  Polymorphism of Genetic Ambigrams,
  G. Dudas, G. Huber, M. Wilkinson and D. Yllanes, Virus Evolution, 7, veab038, (2021).

  Presenters

  • Michael Wilkinson

    • Chan-Zuckerberg Biohub

  Authors

  • Michael Wilkinson

    • Chan-Zuckerberg Biohub

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• Impact of the localization of the RNA binding domain of protein shells on the stability of virus particles

  ORAL

  March 16, 2022, 12:42 PM – March 16, 2022, 12:54 PM

  Presenters

  • Mohammadamin Safdari

    • University of California, Riverside

  Authors

  • Mohammadamin Safdari

    • University of California, Riverside

  • Yinan Dong

    • University of California, Riverside

  • Paul Van der Schoot

    • Eindhoven University of Technology

  • Roya Zandi

    • University of California, Riverside

  View abstract →

• Ionic propulsion in a non-motile dinoflagellate.

  ORAL

  March 16, 2022, 12:54 PM – March 16, 2022, 1:06 PM

  Presenters

  • Adam G Larson

    • Stanford University

  Authors

  • Adam G Larson

    • Stanford University

  View abstract →

• Quantitative in vivo measurement of fork velocity by deep sequencing

  ORAL

  March 16, 2022, 1:06 PM – March 16, 2022, 1:18 PM

  Publication: Planned: Quantitative in vivo measurement of fork velocity by deep sequencing.

  Presenters

  • Dean Huang

    • University of Washington

  Authors

  • Dean Huang

    • University of Washington

  • Paul Wiggins

    • University of Washington

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• Accessibility Patterns and Folding Frustration in Long Telomeric Overhangs

  ORAL

  March 16, 2022, 1:18 PM – March 16, 2022, 1:30 PM

  Presenters

  • Hamza Balci

    • Kent State University

  Authors

  • Hamza Balci

    • Kent State University

  • sajad shiekh

    • Kent State University

  • Golam Mustafa

    • Kent State University

  • Eric Yokie

    • Kent State University

  • Mohammed E Hoque

    • Kent State University

  • John J Portman

    • Kent State University

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• Insertions and deletions affect RNA-protein interactions through RNA secondary structure

  ORAL

  March 16, 2022, 1:30 PM – March 16, 2022, 1:42 PM

  Presenters

  • Ralf Bundschuh

    • Ohio State University
    • Ohio State Univ - Columbus

  Authors

  • Ralf Bundschuh

    • Ohio State University
    • Ohio State Univ - Columbus

  • Carlos Owusu Ansah

    • Ohio State University

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• Conformational dynamics of the Grp94 molecular chaperone in protein remodeling

  ORAL

  March 16, 2022, 1:42 PM – March 16, 2022, 1:54 PM

  Presenters

  • ANDREA N KRAVATS

    • Miami University

  Authors

  • John Paul Alao

    • Miami University

  • Molly Wynveen

    • Miami University

  • IK Obaseki

    • Miami University

  • Katherine Connors

    • Miami University

  • Quynh Nguyen

    • Miami University

  • Alex Tam

    • Miami University

  • ANDREA N KRAVATS

    • Miami University

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• New paradigms for bacteria sensing the world: molecular mechanisms of mechanosensation

  ORAL

  March 16, 2022, 1:54 PM – March 16, 2022, 2:06 PM

  Presenters

  • David Gomez

    • New York University (NYU)

  Authors

  • David Gomez

    • New York University (NYU)

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• Investigating structural stability of transmembrane Ligand-Appended Pillar[n]ene (LAP)

  ORAL

  March 16, 2022, 2:06 PM – March 16, 2022, 2:18 PM

  Presenters

  • Tyler J Duncan

    • University of Texas at Austin

  Authors

  • Tyler J Duncan

    • University of Texas at Austin

  • Harekrushna Behera

    • University of Texas at Austin

  • Manish Kumar

    • University of Texas at Austin

  • Venkatraghavan Ganesan

    • University of Texas at Austin

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• Building an artificial neuron with simple hydrophobic nanopores: a one component memristor

  ORAL

  March 16, 2022, 2:18 PM – March 16, 2022, 2:30 PM

  Presenters

  • Goncalo S Paulo

    • DIMA - Sapienza University of Rome

  Authors

  • Goncalo S Paulo

    • DIMA - Sapienza University of Rome

  • Alberto Gubbiotti

    • Univ of Rome La Sapienza

  • Alberto Giacomello

    • Univ of Rome La Sapienza

  View abstract →