Physics of Cell Fate Transitions II

Presentations

• Mapping Transcriptomic Vector Fields of Single Cells

  ORAL · Invited

  March 15, 2022, 11:30 AM – March 15, 2022, 12:06 PM

  Publication: Qiu, X. et al. Mapping Transcriptomic Vector Fields of Single Cells. bioRxiv, 696724, doi:10.1101/696724 (2021).

  Presenters

  • Jianhua Xing

    • University of Pittsburgh

  Authors

  • Xiaojie Qiu

    • MIT

  • Yan Zhang

    • University of Pittsburgh

  • Ivet Bahar

    • University of Pittsburgh

  • Vijay G Sankaran

    • Broad Institute

  • Jianhua Xing

    • University of Pittsburgh

  • Jonathan Weissman

    • MIT

  View abstract →

• Landscape-inspired order parameters for classifying cell fate using single-cell RNA-seq data

  ORAL

  March 15, 2022, 12:06 PM – March 15, 2022, 12:18 PM

  Presenters

  • Maria Yampolskaya

    • Boston University

  Authors

  • Maria Yampolskaya

    • Boston University

  • Jason W Rocks

    • Boston University

  • Pankaj Mehta

    • Boston University

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• Features of Gene Regulatory Dynamics on Minimally Frustrated Topologies

  ORAL

  March 15, 2022, 12:18 PM – March 15, 2022, 12:30 PM

  Presenters

  • Shubham Tripathi

    • Rice University

  Authors

  • Shubham Tripathi

    • Rice University

  • David A Kessler

    • Bar Ilan University

  • Herbie Levine

    • Northeastern University
    • Northeastern Univ

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• Glassy fluctuations in gene regulatory networks

  ORAL

  March 15, 2022, 12:30 PM – March 15, 2022, 12:42 PM

  Publication: Glassy fluctuations in gene regulatory networks (in preparation)

  Presenters

  • Fabrizio Olmeda

    • Max Planck Institute for the Physics of Complex Systems

  Authors

  • Fabrizio Olmeda

    • Max Planck Institute for the Physics of Complex Systems

  • Yiteng Dang

    • Max Planck Institute for Physics of Complex Systems

  • Fabian Rost

    • Centre for Regenerative Therapies Dresden

  • Steffen Rulands

    • Max Planck Institute for the Physics of Complex Systems

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• Master regulators as order parameters of gene expression states

  ORAL

  March 15, 2022, 12:42 PM – March 15, 2022, 12:54 PM

  Publication: Krämer, Andreas. 2021. "Master Regulators as Order Parameters of Gene Expression States." Physical Review. E 103 (1-1): 012409.

  Presenters

  • Andreas Kraemer

    • QIAGEN

  Authors

  • Andreas Kraemer

    • QIAGEN

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• Individual and Collective Events in Cell Competition Dynamics using a Cellular Potts Model

  ORAL

  March 15, 2022, 12:54 PM – March 15, 2022, 1:06 PM

  Presenters

  • Logan C Carpenter

    • Carnegie Mellon University

  Authors

  • Logan C Carpenter

    • Carnegie Mellon University

  • Daniel Gradeci

    • University College London

  • Shiladitya Banerjee

    • Carnegie Mellon Univ
    • Carnegie Mellon University

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• Growth Dynamics of Bacterial Cell Cycles

  ORAL

  March 15, 2022, 1:06 PM – March 15, 2022, 1:18 PM

  Presenters

  • Teresa Lo

    • University of Washington

  Authors

  • Teresa Lo

    • University of Washington

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• Utilizing massively parallel CRISPRi assays to investigate persistence during antibiotic exposure

  ORAL

  March 15, 2022, 1:18 PM – March 15, 2022, 1:30 PM

  Presenters

  • Keiran Stevenson

    • Cornell University

  Authors

  • Keiran Stevenson

    • Cornell University

  • Guillaume Lambert

    • Cornell University

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• Covariance structure in sizes and numbers shows that membrane-bound organelles grow in a more correlated manner when cellular growth rate is limited

  ORAL

  March 15, 2022, 1:30 PM – March 15, 2022, 1:42 PM

  Presenters

  • Shixing Wang

    • Washington University, St. Louis

  Authors

  • Shixing Wang

    • Washington University, St. Louis

  • Shankar Mukherji

    • Washington University, St. Louis

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• Reversibiliy and cell division dynamics of elongated Escherichia coli cells obtained at high pressure

  ORAL

  March 15, 2022, 1:42 PM – March 15, 2022, 1:54 PM

  Presenters

  • Steven Murray

    • University of Arkansas

  Authors

  • Steven Murray

    • University of Arkansas

  • Aidan Glaser Schoff

    • University of Arkansas

  • Albert Libchaber

    • The Rockefeller University

  • Pradeep Kumar

    • University of Arkansas

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• Dynamics of colonization and phenotypic adaptations of commensal gut bacteria in larval zebrafish populations.

  ORAL

  March 15, 2022, 1:54 PM – March 15, 2022, 2:06 PM

  Presenters

  • Vivek Ramakrishna

    • University of Oregon

  Authors

  • Vivek Ramakrishna

    • University of Oregon

  • Raghuveer Parthasarathy

    • University of Oregon

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• Stochastic induction dynamics of the lac operon

  ORAL

  March 15, 2022, 2:06 PM – March 15, 2022, 2:18 PM

  Presenters

  • Louis B Cortes

    • Cornell University

  Authors

  • Louis B Cortes

    • Cornell University

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• Competition between two cell types under cell cycle regulation with apoptosis

  ORAL

  March 15, 2022, 2:18 PM – March 15, 2022, 2:30 PM

  Presenters

  • Jintao Li

    • Kyoto Univ

  Authors

  • Jintao Li

    • Kyoto Univ

  • Simon K Schnyder

    • Kyoto Univ

  • Ryoichi Yamamoto

    • Kyoto Univ

  • Matthew S Turner

    • Univ of Warwick

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