Data Science for Biophysics

Presentations

• Bayesian nonparametrics in multi-particle superresolved tracking

  ORAL · Invited

  March 14, 2022, 8:00 AM – March 14, 2022, 8:36 AM

  Presenters

  • Zeliha Kilic

    • St Jude's Childrens

  Authors

  • Zeliha Kilic

    • St Jude's Childrens

  • Steve Presse

    • ASU

  • Ioannis Sgouralis

    • University of Tennessee, Knoxville

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• Inference of C. elegans neural network structure from calcium flurescence time series data with reservoir computing

  ORAL

  March 14, 2022, 8:36 AM – March 14, 2022, 8:48 AM

  Presenters

  • Amitava Banerjee

    • University of Maryland, College Park

  Authors

  • Amitava Banerjee

    • University of Maryland, College Park

  • Sarthak Chandra

    • Massachusetts Institute of Technology MIT
    • Department of Brain and Cognitive Sciences and McGovern Institute, Massachusetts Institute of Technology, Cambridge, USA

  • Edward Ott

    • University of Maryland, College Park

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• Towards Interpretable Imputation of Missing Observations with Time Slice Synthetic Minority Oversampling Technique

  ORAL

  March 14, 2022, 8:48 AM – March 14, 2022, 9:00 AM

  Presenters

  • Andrew Baumgartner

    • Institute for Systems Biology

  Authors

  • Andrew Baumgartner

    • Institute for Systems Biology

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• Graph neural networks for multicellular dynamics

  ORAL

  March 14, 2022, 9:00 AM – March 14, 2022, 9:12 AM

  Presenters

  • Ming Han

    • University of Chicago

  Authors

  • Ming Han

    • University of Chicago

  • John Devany

    • University of Chicago

  • Margaret Gardel

    • University of Chicago

  • Vincenzo Vitelli

    • University of Chicago

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• Sociophysics of subjective pain: robust cluster assignment based on sparsely and irregularly sampled data from a dynamical system

  ORAL

  March 14, 2022, 9:12 AM – March 14, 2022, 9:24 AM

  Publication: https://arxiv.org/abs/2108.13963

  Presenters

  • Gary K Nave

    • Northwestern University

  Authors

  • Gary K Nave

    • Northwestern University

  • Swati Padhee

    • Wright State University

  • Kumar Utkarsh

    • Northwestern University

  • Amanuel Alambo

    • Wright State University

  • Tanvi Banerjee

    • Wright State University

  • Nirmish Shah

    • Duke University

  • Daniel M Abrams

    • Northwestern University

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• Learning the shape of the protein universe with 3D-equivariant holographic convolutional neural networks

  ORAL

  March 14, 2022, 9:24 AM – March 14, 2022, 9:36 AM

  Presenters

  • Michael Pun

    • University of Washington

  Authors

  • Michael Pun

    • University of Washington

  • Andrew Ivanov

    • University of Washington

  • Quinn Bellamy

    • University of Washington

  • Colin LaMont

    • Max Planck Institute for Dynamics and Self-Organization

  • Jakub Otwinowski

    • Max Planck Institute for Dnyamics and Self-Organization

  • Armita Nourmohammad

    • University of Washington

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• Machine learning continuum models for cellular force generation

  ORAL

  March 14, 2022, 9:36 AM – March 14, 2022, 9:48 AM

  Presenters

  • Matthew Schmitt

    • University of Chicago

  Authors

  • Matthew Schmitt

    • University of Chicago

  • Jonathan Colen

    • University of Chicago

  • Stefano Sala

    • Loyola University Chicago

  • Margaret Gardel

    • University of Chicago

  • Patrick W Oakes

    • Loyola University Chicago

  • Vincenzo Vitelli

    • University of Chicago

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• EMBED: a low dimensional reconstruction of gut microbiome dynamics based on ecological normal modes

  ORAL

  March 14, 2022, 9:48 AM – March 14, 2022, 10:00 AM

  Publication: https://www.biorxiv.org/content/10.1101/2021.03.18.436036v1

  Presenters

  • Mayar A Shahin

    • University of Florida

  Authors

  • Mayar A Shahin

    • University of Florida

  • Purushottam Dixit

    • University of Florida

  • Brian Ji

    • University of California - San Diego

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• Parameter estimation from stochastic processes applied to neural dynamics and aging

  ORAL

  March 14, 2022, 10:00 AM – March 14, 2022, 10:12 AM

  Presenters

  • Helmut H Strey

    • Stony Brook University (SUNY)

  Authors

  • Helmut H Strey

    • Stony Brook University (SUNY)

  • Lilianne R Mujica-Parodi

    • Stony Brook University

  • Uri Alon

    • Weizmann

  • Yifan Yang

    • Weizmann

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• Salient projections over maximum projections: Improving deep-learning detection and segmentation during invasion of cell-dense spheroids.

  ORAL

  March 14, 2022, 10:12 AM – March 14, 2022, 10:24 AM

  Presenters

  • Christopher Z Eddy

    • Oregon State University

  Authors

  • Christopher Z Eddy

    • Oregon State University

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• Non-linear interpolation for genetic fitness prediction

  ORAL

  March 14, 2022, 10:24 AM – March 14, 2022, 10:36 AM

  Presenters

  • Kai Shimagaki

    • University of California, Riverside

  Authors

  • Kai Shimagaki

    • University of California, Riverside

  • John P Barton

    • University of California, Riverside

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• Multi-Model Analysis of De novo Antimicrobial Peptide Design Via Variational Autoencoder Latent Sampling

  ORAL

  March 14, 2022, 10:36 AM – March 14, 2022, 10:48 AM

  Presenters

  • Samuel Renaud

    • Concordia University (Canada)

  Authors

  • Samuel Renaud

    • Concordia University (Canada)

  • Ré A Mansbach

    • Concordia University

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• Learning the forces in active matter from the trajectories: a Graph-neural-network approach

  ORAL

  March 14, 2022, 10:48 AM – March 14, 2022, 11:00 AM

  Presenters

  • Miguel Ruiz-Garcia

    • Universidad Carlos III de Madrid

  Authors

  • Miguel Ruiz-Garcia

    • Universidad Carlos III de Madrid

  • Miguel Barriuso Gutierrez

    • Universidad Complutense de Madrid

  • Luca M Ghiringhelli

    • Fritz Haber Institute
    • Fritz-Haber-Institute, MPS, Berlin, Germany
    • Fritz-Haber Institute
    • NOMAD Laboratory at the Fritz Haber Institute and Humboldt University

  • Chantal Valeriani

    • Universidad Complutense de Madrid

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