DNA and RNA Biophysics

Presentations

• DNA transport and conformational dynamics in active cytoskeleton composites

  ORAL

  March 19, 2021, 11:30 AM – March 19, 2021, 11:42 AM

  Presenters

  • Jonathan Garamella

    • University of San Diego
    • Biophysics, University of San Diego

  Authors

  • Jonathan Garamella

    • University of San Diego
    • Biophysics, University of San Diego

  • Serenity Adalbert

    • University of San Diego

  • Gina Aguirre

    • University of San Diego

  • Ryan J. McGorty

    • University of San Diego
    • Department of Physics and Biophysics, University of San Diego

  • Rae M Robertson-Anderson

    • University of San Diego
    • Department of Physics and Biophysics, University of San Diego
    • Biophysics, University of San Diego
    • Physics and Biophysics, University of SanDiego

  View abstract →

• Nucleic acid melting under small tension

  ORAL

  March 19, 2021, 11:42 AM – March 19, 2021, 11:54 AM

  Presenters

  • Derek Hart

    • Georgia Institute of Technology

  Authors

  • Derek Hart

    • Georgia Institute of Technology

  • Jiyoun Jeong

    • Georgia Institute of Technology

  • Harold Kim

    • Georgia Institute of Technology

  View abstract →

• First passage time study of DNA strand displacement

  ORAL

  March 19, 2021, 11:54 AM – March 19, 2021, 12:06 PM

  Presenters

  • Alexander Cook

    • Georgia Institute of Technology

  Authors

  • Alexander Cook

    • Georgia Institute of Technology

  • Bo Broadwater

    • Georgia Institute of Technology

  • Harold Kim

    • Georgia Institute of Technology

  View abstract →

• Data-driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization

  ORAL

  March 19, 2021, 12:06 PM – March 19, 2021, 12:18 PM

  Presenters

  • Bin Zhang

    • Massachusetts Institute of Technology MIT

  Authors

  • Bin Zhang

    • Massachusetts Institute of Technology MIT

  View abstract →

• Field theories for density estimation on sequence space

  ORAL

  March 19, 2021, 12:18 PM – March 19, 2021, 12:30 PM

  Presenters

  • Wei-Chia Chen

    • Cold Spring Harbor Lab

  Authors

  • Wei-Chia Chen

    • Cold Spring Harbor Lab

  • Juannan Zhou

    • Cold Spring Harbor Lab

  • Jason M Sheltzer

    • Cold Spring Harbor Lab

  • Justin Block Kinney

    • Cold Spring Harbor Lab
    • Cold Spring Harbor Laboratory

  • David M McCandlish

    • Cold Spring Harbor Lab

  View abstract →

• Observation of Stochastic Resonance in Transport of the DNA between Entropic Traps

  ORAL

  March 19, 2021, 12:30 PM – March 19, 2021, 12:42 PM

  Presenters

  • Shayan Lame

    • Brown University
    • Physics, Brown University

  Authors

  • Shayan Lame

    • Brown University
    • Physics, Brown University

  View abstract →

• Anharmonic bending of DNA base-pair mismatches

  ORAL

  March 19, 2021, 12:42 PM – March 19, 2021, 12:54 PM

  Presenters

  • Michael Ryan

    • Georgia Institute of Technology

  Authors

  • Michael Ryan

    • Georgia Institute of Technology

  • Jiyoun Jeong

    • Georgia Institute of Technology

  • Tony Lemos

    • Georgia Institute of Technology

  • Harold Kim

    • Georgia Institute of Technology

  View abstract →

• Mechanically bent DNA molecules as sensing amplifiers for probing interactions of DNA with metal ions and small organic molecules

  ORAL

  March 19, 2021, 12:54 PM – March 19, 2021, 1:06 PM

  Presenters

  • Yong Wang

    • University of Arkansas

  Authors

  • Yong Wang

    • University of Arkansas

  • Jack Freeland

    • University of Arkansas

  • Lihua Zhang

    • Center for Functional Nanomaterials, Brookhaven National Laboratory

  • Shih-Ting Wang

    • Center for Functional Nanomaterials, Brookhaven National Laboratory

  • Mason Ruiz

    • University of Arkansas

  View abstract →

• Decoding DNA barcodes using a Cylindrical Nanopore

  ORAL

  March 19, 2021, 1:06 PM – March 19, 2021, 1:18 PM

  Presenters

  • Aniket Bhattacharya

    • University of Central Florida
    • Physics, University of Central Flordina
    • Physics, University of Central Florida

  Authors

  • Aniket Bhattacharya

    • University of Central Florida
    • Physics, University of Central Flordina
    • Physics, University of Central Florida

  • Swarnadeep Seth

    • University of Central Florida
    • Physics, University of Central Flordina

  View abstract →

• Polymer Single File Diffusion: A phase diagram

  ORAL

  March 19, 2021, 1:18 PM – March 19, 2021, 1:30 PM

  Presenters

  • Hanyang Wang

    • Univ of Ottawa

  Authors

  • Hanyang Wang

    • Univ of Ottawa

  • Gary Slater

    • Univ of Ottawa
    • Physics, Univ of Ottawa

  View abstract →

• Theory of the Overestimation of Protein-RNA Binding Energies obtained by Molecular Dynamics Simulations with Umbrella Sampling.

  ORAL

  March 19, 2021, 1:30 PM – March 19, 2021, 1:42 PM

  Presenters

  • Zachary Gvildys

    • University of California, Los Angeles

  Authors

  • Zachary Gvildys

    • University of California, Los Angeles

  • Robijn F Bruinsma

    • University of California, Los Angeles

  View abstract →

• Integrating double stranded RNA binding proteins into RNA secondary structure prediction

  ORAL

  March 19, 2021, 1:42 PM – March 19, 2021, 1:54 PM

  Presenters

  • Elan Shatoff

    • Department of Physics, The Ohio State University

  Authors

  • Elan Shatoff

    • Department of Physics, The Ohio State University

  • Ralf Bundschuh

    • Department of Physics, The Ohio State University

  View abstract →

• Error-speed correlations in biopolymer synthesis

  ORAL

  March 19, 2021, 1:54 PM – March 19, 2021, 2:06 PM

  Presenters

  • Davide Chiuchiu

    • Okinawa Inst of Sci & Tech

  Authors

  • Davide Chiuchiu

    • Okinawa Inst of Sci & Tech

  • Yuhai Tu

    • IBM T.J. Watson Research Center
    • IBM T. J. Watson Research Center
    • IBM TJ Watson Research Center

  • Simone Pigolotti

    • Okinawa Inst of Sci & Tech

  View abstract →

• Biophysics of centrosome separation and centrosome-nucleus association

  ORAL

  March 19, 2021, 2:06 PM – March 19, 2021, 2:18 PM

  Presenters

  • GOKBERK KABACAOGLU

    • Simons Foundation

  Authors

  • GOKBERK KABACAOGLU

    • Simons Foundation

  • Reza Farhadifar

    • Simons Foundation

  • Gunar Fabig

    • TU Dresden

  • Che-Hang Yu

    • Harvard University
    • MCB, Harvard University

  • Hai-Yin Wu

    • Harvard University
    • MCB, Harvard University

  • Daniel Needleman

    • Harvard University
    • CCB, Flatiron Institute
    • MCB, Harvard University
    • Department of Physics, Brandeis University

  • Thomas Müller-Reichert

    • TU Dresden

  • Michael Shelley

    • Simons Foundation
    • CCB, Flatiron Institute
    • Flatiron Institute/NYU
    • Flatiron Institute and New York University
    • Flatiron Institute, Center for Computational Biology, Simons Foundation
    • Center for Computational Biology, Flatiron Institute
    • Center for Computational Biology, Flatiron Institute, Simons Foundation
    • Courant/NYU and Flatironinstitute

  View abstract →

• Intrinsic Rashba coupling due to hydrogen bonding in DNA and Oligopeptides

  ORAL

  March 19, 2021, 2:18 PM – March 19, 2021, 2:30 PM

  Presenters

  • Ernesto Medina

    • School of Physical Sciences and Nanotechnology, Yachay Tech University

  Authors

  • Juan Torres

    • School of Physical Sciences and Nanotechnology, Yachay Tech University

  • Raul Hidalgo

    • School of Physical Sciences and Nanotechnology, Yachay Tech University

  • Solmar Varela

    • School of Chemical Sciences and Engineering, Yachay Tech University

  • Vladimiro Mujica

    • Molecular Sciences, Arizona State University

  • Bertrand Berche

    • Laboratoire de Physique et Chimie Theoriques, University of Lorraine

  • Ernesto Medina

    • School of Physical Sciences and Nanotechnology, Yachay Tech University

  View abstract →