Winner-take-all dynamics in self-assembly

ORAL

Abstract

Understanding competitive nucleation between different crystal polymorphs is critical for the selective self-assembly of any particular structure. For crystals made of one or a few components, selectivity is often accomplished through carefully designed annealing protocols. In highly multi-component systems, we argue for a new winner-take-all mechanism that enhances selectivity through depletion. For such systems, nucleation and growth of one structure can deplete monomers in a way that dramatically reduces the nucleation rates of all other structures without significantly affecting its own nucleation rate. We identify regimes of winner-take-all depletion using theory and rare-event sampling methods in multi-component self-assembly with unequal component concentrations. We present experimental evidence for such winner-take-all dynamics in a system of single-stranded DNA molecules able to assemble into three distinct two-dimensional crystal configurations.

*Supported by National Science Foundation grant NSF651CCF-1317694, MRSEC grant DMR-2011854, the Evans Foundation for Molecular Medicine, and the Carver Mead New Adventures Fund.

Presenters

  • Jackson O'Brien

    • Physics, University of Chicago

Authors

  • Jackson O'Brien

    • Physics, University of Chicago
  • Constantine G Evans

    • Hamilton Institute, Maynooth University
  • Erik Winfree

    • Computer Science, Computation and Neural Systems, Bioengineering, California Institute of Technology
  • Arvind Murugan

    • Physics, University of Chicago
    • University of Chicago