Physics of Genome Organization: From DNA to Chromatin: II

Presentations

• On the Border of Order: Chromosomal Organization in Space and Time

  Invited

  March 5, 2020, 11:15 AM – March 5, 2020, 11:51 AM

  Presenters

  • Olga Dudko

    • Physics, University of California, San Diego

  Authors

  • Yaojun Zhang

    • Princeton University

  • Nimish Khanna

    • Molecular Biology, University of California, San Diego

  • Joseph Lucas

    • Physics, University of California, San Diego

  • Cornelis Murre

    • Molecular Biology, University of California, San Diego

  • Olga Dudko

    • Physics, University of California, San Diego

  View abstract →

• A “Tug-of-War” in a three dimensional Double-Nanopore system

  ORAL

  March 5, 2020, 11:51 AM – March 5, 2020, 12:03 PM

  Presenters

  • Swarnadeep Seth

    • Univ of Central Florida

  Authors

  • Swarnadeep Seth

    • Univ of Central Florida

  • Aniket Bhattacharya

    • Univ of Central Florida

  View abstract →

• Studies of nucleosome-decorated DNA structures and deformations using a new analytical model

  ORAL

  March 5, 2020, 12:03 PM – March 5, 2020, 12:15 PM

  Presenters

  • Seyed Ahmad Sabok-Sayr

    • Rutgers University, New Brunswick

  Authors

  • Seyed Ahmad Sabok-Sayr

    • Rutgers University, New Brunswick

  • Wilma K Olson

    • Rutgers University, New Brunswick

  View abstract →

• Long-lived memory and dynamics of liquefied chromatin

  ORAL

  March 5, 2020, 12:15 PM – March 5, 2020, 12:27 PM

  Presenters

  • Edward Banigan

    • MIT
    • Massachusetts Institute of Technology MIT

  Authors

  • Edward Banigan

    • MIT
    • Massachusetts Institute of Technology MIT

  • Houda Belaghzal

    • University of Massachusetts Medical School

  • Tyler Borrman

    • University of Massachusetts Medical School

  • Job Dekker

    • University of Massachusetts Medical School

  • Leonid Mirny

    • Massachusetts Institute of Technology MIT

  View abstract →

• The Dynamic Archaeal Chromatin “Slinky”

  Invited

  March 5, 2020, 12:27 PM – March 5, 2020, 1:03 PM

  Presenters

  • Samuel Bowerman

    • University of Colorado Boulder

  Authors

  • Samuel Bowerman

    • University of Colorado Boulder

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• 5-methyl-cytosine binding proteins loop DNA under nanoconfinement

  ORAL

  March 5, 2020, 1:03 PM – March 5, 2020, 1:15 PM

  Presenters

  • Ming Liu

    • North Carolina State University

  Authors

  • Ming Liu

    • North Carolina State University

  • David C. Williams

    • Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill

  • Hong Wang

    • North Carolina State University

  • Robert Riehn

    • North Carolina State University

  View abstract →

• Nuclear chromatin patterns: modeling dynamics of intra-chromatin interactions and its impact on structure organization

  ORAL

  March 5, 2020, 1:15 PM – March 5, 2020, 1:27 PM

  Presenters

  • Rabia Laghmach

    • Iowa State University

  Authors

  • Rabia Laghmach

    • Iowa State University

  • Michele Di Pierro

    • Rice Univ
    • Center for Theoretical Biological Physics, Rice University

  • Davit Potoyan

    • Iowa State University

  View abstract →

• Long-distance group dynamics of RNA polymerases via DNA supercoiling

  ORAL

  March 5, 2020, 1:27 PM – March 5, 2020, 1:39 PM

  Presenters

  • Sangjin Kim

    • University of Illinois at Urbana-Champaign

  Authors

  • Sangjin Kim

    • University of Illinois at Urbana-Champaign

  View abstract →

• Interplay of chromatin self-adhesion and lengthwise compaction on interchromosomal organization

  ORAL

  March 5, 2020, 1:39 PM – March 5, 2020, 1:51 PM

  Presenters

  • Sumitabha Brahmachari

    • Rice Univ

  Authors

  • Sumitabha Brahmachari

    • Rice Univ

  • Vinicius Contessoto

    • Rice Univ

  • Michele Di Pierro

    • Rice Univ
    • Center for Theoretical Biological Physics, Rice University

  • Jose N Onuchic

    • Rice Univ
    • Center for Theoretical Biological Physics, Rice University

  View abstract →

• A minimal model for correlated chromatin dynamics

  ORAL

  March 5, 2020, 1:51 PM – March 5, 2020, 2:03 PM

  Presenters

  • Kuang Liu

    • Syracuse University

  Authors

  • Kuang Liu

    • Syracuse University

  • Alison Patteson

    • Syracuse University
    • Physics, Syracuse University
    • Department of Physics, Syracuse University

  • Edward Banigan

    • MIT
    • Massachusetts Institute of Technology MIT

  • Jennifer Schwarz

    • Syracuse University
    • Physics, Syracuse University

  View abstract →

• Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity

  ORAL

  March 5, 2020, 2:03 PM – March 5, 2020, 2:15 PM

  Presenters

  • Jaeyoon Lee

    • Physics, Cornell University

  Authors

  • Tung T Le

    • Physics, Cornell University / HHMI

  • Xiang Gao

    • Physics, Cornell University / HHMI

  • Seong ha Park

    • Biophysics, Cornell University

  • Jaeyoon Lee

    • Physics, Cornell University

  • James T. Inman

    • Physics, Cornell University / HHMI

  • Joyce H Lee

    • Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine

  • Jessica L Killian

    • Physics, Cornell University / HHMI

  • Ryan P Badman

    • Physics, Cornell University

  • James M Berger

    • Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine

  • Michelle D. Wang

    • Physics, Cornell University / HHMI

  View abstract →