Inference, Information, and Learning in Biophysics: II

Presentations

• The strange case of Dr Jekyll and Mr Hyde: The two faces of singular models.

  Invited

  March 5, 2020, 8:00 AM – March 5, 2020, 8:36 AM

  Presenters

  • Paul Wiggins

    • Physics, Bioengineering and Microbiology, University of Washington

  Authors

  • Paul Wiggins

    • Physics, Bioengineering and Microbiology, University of Washington

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• Learning dynamical information from static protein and sequencing data

  ORAL

  March 5, 2020, 8:36 AM – March 5, 2020, 8:48 AM

  Presenters

  • Philip Pearce

    • Department of Systems Biology, Harvard Medical School
    • Harvard Medical School

  Authors

  • Philip Pearce

    • Department of Systems Biology, Harvard Medical School
    • Harvard Medical School

  • Francis G Woodhouse

    • University of Oxford

  • Aden W Forrow

    • University of Oxford

  • Ashley Kelly

    • Durham University

  • Halim Kusumaatmaja

    • Durham University
    • Durham university

  • Jorn Dunkel

    • Massachusetts Institute of Technology MIT
    • Massachusetts Institute of Technology
    • MIT

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• Associative Memory of Structured Knowledge

  ORAL

  March 5, 2020, 8:48 AM – March 5, 2020, 9:00 AM

  Presenters

  • Julia Steinberg

    • Harvard University

  Authors

  • Julia Steinberg

    • Harvard University

  • Haim Sompolinsky

    • Harvard University

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• Can model reduction replace expert intuition for modeling complex biological systems?

  ORAL

  March 5, 2020, 9:00 AM – March 5, 2020, 9:12 AM

  Presenters

  • Cody Petrie

    • Brigham Young Univ - Provo

  Authors

  • Cody Petrie

    • Brigham Young Univ - Provo

  • Dane Bjork

    • Brigham Young Univ - Provo

  • Mark Transtrum

    • Brigham Young Univ - Provo
    • Physics & Astronomy, Brigham Young University
    • Brigham Young University
    • Physics and Astronomy, Brigham Young University

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• Limits on the suppression of molecular fluctuations and oscillation dephasing in stochastic reaction networks

  ORAL

  March 5, 2020, 9:12 AM – March 5, 2020, 9:24 AM

  Presenters

  • Jiawei Yan

    • Harvard Medical School

  Authors

  • Jiawei Yan

    • Harvard Medical School

  • Johan Paulsson

    • Harvard Medical School

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• Kalman-like Self-Tuned Sensitivity in Biophysical Sensing

  ORAL

  March 5, 2020, 9:24 AM – March 5, 2020, 9:36 AM

  Presenters

  • Kabir Husain

    • University of Chicago
    • Department of Physics, University of Chicago

  Authors

  • Kabir Husain

    • University of Chicago
    • Department of Physics, University of Chicago

  • Weerapat Pittayakanchit

    • Department of Physics, University of Chicago
    • University of Chicago

  • Gopal Pattanayak

    • Department of Molecular Genetics and Cell Biology, University of Chicago

  • Michael Rust

    • University of Chicago
    • Department of Molecular Genetics and Cell Biology, University of Chicago
    • Univ of Chicago
    • Molecular Genetics and Cell Biology, University of Chicago

  • Arvind Murugan

    • Physics, University of Chicago
    • University of Chicago
    • Department of Physics, University of Chicago

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• Searching for the Relevant Properties of Binary Datasets: Is your Model Truly Pairwise?

  ORAL

  March 5, 2020, 9:36 AM – March 5, 2020, 9:48 AM

  Presenters

  • Clelia De Mulatier

    • University of Pennsylvania

  Authors

  • Clelia De Mulatier

    • University of Pennsylvania

  • Paolo Pietro Mazza

    • Institute for Theoretical Physics, University of Tübingen

  • Matteo Marsili

    • International Centre for Theoretical Physics

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• Information efficiency of bacterial chemotaxis

  ORAL

  March 5, 2020, 9:48 AM – March 5, 2020, 10:00 AM

  Presenters

  • Henry Mattingly

    • Yale University
    • MCDB & Physics, Yale University

  Authors

  • Henry Mattingly

    • Yale University
    • MCDB & Physics, Yale University

  • Keita Kamino

    • Yale University

  • Xiaowei Zhang

    • Peking University

  • Benjamin B Machta

    • Physics, Yale University
    • Yale University
    • Department of Physics, Yale University

  • Thierry Emonet

    • Yale University
    • MCDB & Physics, Yale University

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• Decision-making at a T-junction by gradient-sensing agents

  ORAL

  March 5, 2020, 10:00 AM – March 5, 2020, 10:12 AM

  Presenters

  • Jinzi Mac Huang

    • University of California, San Diego

  Authors

  • Tanvi Gandhi

    • University of California, San Diego

  • Jinzi Mac Huang

    • University of California, San Diego

  • Antoine Aubret

    • University of California, San Diego

  • Desmond Yaocheng Li

    • University of California, San Diego

  • Sophie Ramananarivo

    • University of California, San Diego

  • Massimo Vergassola

    • University of California, San Diego

  • Jeremie Palacci

    • University of California, San Diego

  View abstract →

• Trading bits in the readout of positional information

  ORAL

  March 5, 2020, 10:12 AM – March 5, 2020, 10:24 AM

  Presenters

  • Marianne Bauer

    • Princeton University

  Authors

  • Marianne Bauer

    • Princeton University

  • William S Bialek

    • princeton university
    • Department of Physics, Princeton University
    • Princeton University
    • Physics, Princeton University

  • Thomas Gregor

    • Princeton University

  • Mariela D Petkova

    • Harvard University

  • Eric Wieschaus

    • Princeton University

  View abstract →

• Single-Molecule Conductance and Conformational Analysis with Engineered Nano-Junctions for Nucleic Acid Sequencing

  ORAL

  March 5, 2020, 10:24 AM – March 5, 2020, 10:36 AM

  Presenters

  • Prashant Nagpal

    • University of Colorado, Boulder

  Authors

  • Lee Korshoj

    • University of Colorado, Boulder

  • Sepideh Afsari

    • University of Colorado, Boulder

  • Anushree Chatterjee

    • University of Colorado, Boulder
    • Chemical and Biological Engineering, University of Colorado, Boulder

  • Prashant Nagpal

    • University of Colorado, Boulder

  View abstract →