Physics of Microbiomes and Bacterial Communities

Presentations

• A statistical-mechanics approach to microbiome data analysis

  ORAL

  March 3, 2020, 8:00 AM – March 3, 2020, 8:12 AM

  Presenters

  • Robert Marsland

    • Boston Univ

  Authors

  • Robert Marsland

    • Boston Univ

  • Pankaj Mehta

    • Boston Univ
    • Physics, Boston Univ
    • Boston University

  View abstract →

• Quantifying multi-species bacterial interactions in larval zebrafish

  ORAL

  March 3, 2020, 8:12 AM – March 3, 2020, 8:24 AM

  Presenters

  • Deepika Sundarraman

    • Univ of Oregon

  Authors

  • Deepika Sundarraman

    • Univ of Oregon

  • Edouard Hay

    • Univ of Oregon

  • Dylan Martins

    • Univ of Oregon

  • Drew Shields

    • Univ of Oregon

  • Noah Pettinari

    • Univ of Oregon

  • Karen Guillemin

    • Univ of Oregon

  • Raghuveer Parthasarathy

    • Univ of Oregon

  View abstract →

• Species covariance in <i>C.</i> e<i>legans </i>microbiome demonstrates existence of bacteria-bacteria and host-bacteria interactions

  ORAL

  March 3, 2020, 8:24 AM – March 3, 2020, 8:36 AM

  Presenters

  • K. Michael Martini

    • Emory University
    • Emory College

  Authors

  • K. Michael Martini

    • Emory University
    • Emory College

  • Megan Taylor

    • Emory University

  • Ilya M Nemenman

    • Emory University
    • Physics, Emory
    • Physics, Emory University

  • Nicole Marie Vega

    • Emory University

  View abstract →

• Evidence for a multi-level trophic organization of the human gut microbiome

  ORAL

  March 3, 2020, 8:36 AM – March 3, 2020, 8:48 AM

  Presenters

  • Tong Wang

    • University of Illinois at Urbana-Champaign

  Authors

  • Tong Wang

    • University of Illinois at Urbana-Champaign

  • Akshit Goyal

    • Massachusetts Institute of Technology MIT
    • The Simons Centre for the Study of Living Machines, NCBS
    • Physics of Living Systems, Massachusetts Institute of Technology

  • Veronika Dubinkina

    • University of Illinois at Urbana-Champaign

  • Sergei Maslov

    • University of Illinois at Urbana-Champaign

  View abstract →

• Regime shifts in a phage-bacterial ecosystem and strategies for its control

  ORAL

  March 3, 2020, 8:48 AM – March 3, 2020, 9:00 AM

  Presenters

  • Sergei Maslov

    • University of Illinois at Urbana-Champaign

  Authors

  • Sergei Maslov

    • University of Illinois at Urbana-Champaign

  • Kim Sneppen

    • Niels Bohr Institute
    • Niels Bohr Institute, University of Copenhagen

  View abstract →

• Biophysical consequences of sublethal antibiotics on gut bacterial persistence and transmission

  ORAL

  March 3, 2020, 9:00 AM – March 3, 2020, 9:12 AM

  Presenters

  • Raghuveer Parthasarathy

    • Univ of Oregon

  Authors

  • Brandon Schlomann

    • Univ of Oregon

  • Travis J Wiles

    • Univ of Oregon

  • Elena S Wall

    • Univ of Oregon

  • Karen Guillemin

    • Univ of Oregon

  • Raghuveer Parthasarathy

    • Univ of Oregon

  View abstract →

• Delayed antibiotic exposure induces population collapse in enterococcal communities with drug-resistant subpopulations

  ORAL

  March 3, 2020, 9:12 AM – March 3, 2020, 9:24 AM

  Presenters

  • Kelsey Hallinen

    • Biophysics, University of Michigan

  Authors

  • Kelsey Hallinen

    • Biophysics, University of Michigan

  • Jason Karslake

    • Biophysics, University of Michigan

  • Kevin Wood

    • Univ of Michigan - Ann Arbor
    • Biophysics, University of Michigan

  View abstract →

• Predicting microbial community metabolic function from genomic structure

  ORAL

  March 3, 2020, 9:24 AM – March 3, 2020, 9:36 AM

  Presenters

  • Karna Gowda

    • Physics, University of Illinois at Urbana-Champaign

  Authors

  • Karna Gowda

    • Physics, University of Illinois at Urbana-Champaign

  • Derek J Ping

    • Physics, University of Illinois at Urbana-Champaign

  • Laura B Troyer

    • Physics, University of Illinois at Urbana-Champaign

  • Madhav Mani

    • Northwestern University
    • Engineering Sciences and Applied Mathematics, Northwestern University

  • Seppe Kuehn

    • Physics, University of Illinois at Urbana-Champaign

  View abstract →

• Cross-feeding is not necessarily evolutionarily stable

  ORAL

  March 3, 2020, 9:36 AM – March 3, 2020, 9:48 AM

  Presenters

  • Bo Liu

    • Harvard University

  Authors

  • Bo Liu

    • Harvard University

  • Zhiyuan Li

    • Peking University

  • Ned Wingreen

    • Princeton University
    • Department of Molecular Biology; Lewis-Sigler Institute for Integrative Genomics, Princeton University

  View abstract →

• Percolation transition of pusher-type microswimmers

  ORAL

  March 3, 2020, 9:48 AM – March 3, 2020, 10:00 AM

  Presenters

  • Fabian Jan Schwarzendahl

    • School of Natural Sciences, University of California, Merced

  Authors

  • Fabian Jan Schwarzendahl

    • School of Natural Sciences, University of California, Merced

  • Marco G. Mazza

    • Department of Mathematical Sciences, Loughborough University, Leicestershire LE11 3TU, United Kingdom
    • Interdisciplinary Centre for Mathematical Modelling, Loughborough University

  View abstract →

• Biphasic Chemotaxis of <i>E. coli</i> to the Microbiota Metabolite Indole

  ORAL

  March 3, 2020, 10:00 AM – March 3, 2020, 10:12 AM

  Presenters

  • Pushkar Lele

    • Texas A&M Univ

  Authors

  • Jingyun Yang

    • Texas A&M Univ

  • Ravi Chawla

    • Texas A&M Univ

  • Kathy Rhee

    • Texas A&M Univ

  • Rachit Gupta

    • Texas A&M Univ

  • Michael Manson

    • Texas A&M Univ

  • Arul Jayaraman

    • Texas A&M Univ

  • Pushkar Lele

    • Texas A&M Univ

  View abstract →

• Dynamic motility selection drives population segregation in a bacterial swarm

  ORAL

  March 3, 2020, 10:12 AM – March 3, 2020, 10:24 AM

  Presenters

  • Yilin Wu

    • Chinese Univ of Hong Kong

  Authors

  • Yilin Wu

    • Chinese Univ of Hong Kong

  • Wenlong Zuo

    • Chinese Univ of Hong Kong

  View abstract →

• Continuum modeling of bacterial biofilm development

  ORAL

  March 3, 2020, 10:24 AM – March 3, 2020, 10:36 AM

  Presenters

  • Chenyi Fei

    • Princeton University

  Authors

  • Chenyi Fei

    • Princeton University

  • Ricard Alert

    • Princeton University

  • Boyang Qin

    • Princeton University

  • Andrew Bridges

    • Princeton University

  • Bonnie Bassler

    • Princeton University

  • Ned Wingreen

    • Princeton University
    • Department of Molecular Biology; Lewis-Sigler Institute for Integrative Genomics, Princeton University

  View abstract →

• E. coli Bacteria near "Black Hole"

  ORAL

  March 3, 2020, 10:36 AM – March 3, 2020, 10:48 AM

  Presenters

  • Trung Phan

    • Princeton University

  Authors

  • Trung Phan

    • Princeton University

  • Ryan Morris

    • University of Edinburgh

  • Matthew Black

    • Princeton University

  • Ke-Chih Lin

    • Princeton University

  • Julia Bos

    • Pasteur Institute

  • Robert Austin

    • Princeton University

  View abstract →

• Microbial communities governed by interplay of bacterial interaction and biofilm mechanics

  ORAL

  March 3, 2020, 10:48 AM – March 3, 2020, 11:00 AM

  Presenters

  • Gabi Steinbach

    • Georgia Inst of Tech

  Authors

  • Gabi Steinbach

    • Georgia Inst of Tech

  • Michael Ng Siulung

    • Georgia Inst of Tech

  • Cristian Crisan

    • Georgia Inst of Tech

  • Brian K. Hammer

    • Georgia Inst of Tech

  • Peter Yunker

    • Georgia Institute of Technology
    • Physics, GEORGIA TECH
    • Georgia Inst of Tech

  View abstract →