Physics of Proteins and Nucleic Acids I: Structures, Dynamics, Interactions, and Energetics

Presentations

• Single molecule measurements provide insight into general secretory system activity

  Invited

  March 7, 2019, 8:00 AM – March 7, 2019, 8:36 AM

  Presenters

  • Gavin King

    • Physics and Astro., Joint w/ Biochemistry, University of Missouri-Columbia

  Authors

  • Gavin King

    • Physics and Astro., Joint w/ Biochemistry, University of Missouri-Columbia

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• Mechanical determinants of protein function and evolution

  ORAL

  March 7, 2019, 8:36 AM – March 7, 2019, 8:48 AM

  Presenters

  • Tsvi Tlusty

    • Institute for basic science
    • Center for Soft and Living Matter, Institute of Basic Science
    • Center for Soft and Living Matter, Institute for basic science

  Authors

  • Sandipan Dutta

    • Center for Soft and Living Matter, Institute of Basic Science
    • Center for Soft and Living Matter, Institute for basic science

  • Tsvi Tlusty

    • Institute for basic science
    • Center for Soft and Living Matter, Institute of Basic Science
    • Center for Soft and Living Matter, Institute for basic science

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• Protein Intramolecular Motions with Deuteration and Inhibitor Binding Dependence

  ORAL

  March 7, 2019, 8:48 AM – March 7, 2019, 9:00 AM

  Presenters

  • Yanting Deng

    • Physics, University at Buffalo, The State University of New York
    • Department of Physics, University at Buffalo, Buffalo, New York, United States

  Authors

  • Yanting Deng

    • Physics, University at Buffalo, The State University of New York
    • Department of Physics, University at Buffalo, Buffalo, New York, United States

  • Jeffrey McKinney

    • Physics, University at Buffalo, The State University of New York

  • Tod Romo

    • Biochemistry and Biophysics, University of Rochester Medical Center

  • Alan Grossfield

    • Biochemistry and Biophysics, University of Rochester Medical Center

  • Andrea Markelz

    • Physics, University at Buffalo
    • Physics, University at Buffalo, The State University of New York
    • Department of Physics, University at Buffalo, Buffalo, New York, United States
    • University at Buffalo, The State University of New York

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• Optimality of cooperativity in allosteric materials and proteins

  ORAL

  March 7, 2019, 9:00 AM – March 7, 2019, 9:12 AM

  Presenters

  • Riccardo Ravasio

    • Institute of Physics, École Polytechnique Fédérale de Lausanne

  Authors

  • Riccardo Ravasio

    • Institute of Physics, École Polytechnique Fédérale de Lausanne

  • Solange Flatt

    • Institute of Physics, École Polytechnique Fédérale de Lausanne

  • Le Yan

    • Kavli Institute of Theoretical Physics,, University of California Santa Barbara
    • Kavli Institute for Theoretical Physics

  • Stefano Zamuner

    • Institute of Physics, École Polytechnique Fédérale de Lausanne

  • Carolina Brito

    • Instituto de Física, Universidade Federal do Rio Grande do Sul

  • Matthieu Wyart

    • Institute of Physics, École Polytechnique Fédérale de Lausanne
    • Physics, EPFL

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• Finding the Optimal Folding Routes of self-entangled Proteins via Coarse-Grained Molecular Dynamics

  ORAL

  March 7, 2019, 9:12 AM – March 7, 2019, 9:24 AM

  Presenters

  • Claudio Perego

    • Polymer Theory Department, Max Planck Institute for Polymer Research, Mainz (Germany)

  Authors

  • Claudio Perego

    • Polymer Theory Department, Max Planck Institute for Polymer Research, Mainz (Germany)

  • Raffaello Potestio

    • Physics Department, University of Trento, Trento (Italy)

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• Molecular mechanisms for protein-denaturation in urea and guanidinium chloride mixtures

  ORAL

  March 7, 2019, 9:24 AM – March 7, 2019, 9:36 AM

  Presenters

  • Pritam Ganguly

    • University of California, Santa Barbara

  Authors

  • Pritam Ganguly

    • University of California, Santa Barbara

  • Joan-Emma Shea

    • University of California, Santa Barbara

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• Large-scale, automated prediction of protein-ligand binding structures

  ORAL

  March 7, 2019, 9:36 AM – March 7, 2019, 9:48 AM

  Presenters

  • Zhiwei Ma

    • University of Missouri

  Authors

  • Zhiwei Ma

    • University of Missouri

  • Xianjin Xu

    • University of Missouri

  • Rui Duan

    • University of Missouri

  • Xiaoqin Zou

    • Department of Physics and Astronomy, Dalton Cardiovascular Research Center, Department of Biochemistry, and Informatics Institute, University of Missouri - Columbia
    • University of Missouri

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• Inferring protein dynamics through experiment and simulation: collective modes from atomic trajectories

  ORAL

  March 7, 2019, 9:48 AM – March 7, 2019, 10:00 AM

  Presenters

  • Lauren McGough

    • Center for Physics of Evolving Systems and Department of Biochemistry and Molecular Biology, University of Chicago

  Authors

  • Lauren McGough

    • Center for Physics of Evolving Systems and Department of Biochemistry and Molecular Biology, University of Chicago

  • Rama Ranganathan

    • Center for Physics of Evolving Systems and Department of Biochemistry and Molecular Biology, University of Chicago

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• Temperature dependent studies of proteins and their hydration shell properties using megahertz-to-terahertz dielectric spectroscopy

  ORAL

  March 7, 2019, 10:00 AM – March 7, 2019, 10:12 AM

  Presenters

  • Ali Charkhesht

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech

  Authors

  • Ali Charkhesht

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech

  • Djamila Lou

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech

  • Ben Sindle

    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech

  • Vinh Q Nguyen

    • Department of Physics & Center for Soft Matter and Biological Physics, Virginia Tech
    • Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech

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• Protein Structural Fluctuations at Criticality in the Temperature-pressure-crowding Folding Phase Diagram

  ORAL

  March 7, 2019, 10:12 AM – March 7, 2019, 10:24 AM

  Presenters

  • Andrei G Gasic

    • Department of Physics, University of Houston; Center for Theoretical Biological Physics, Rice University

  Authors

  • Andrei G Gasic

    • Department of Physics, University of Houston; Center for Theoretical Biological Physics, Rice University

  • Caleb M Daugherty

    • Department of Physics, University of Houston; Center for Theoretical Biological Physics, Rice University

  • Margaret Cheung

    • Department of Physics, University of Houston; Center for Theoretical Biological Physics, Rice University
    • Department of Physics, University of Houston
    • University of Houston; Center for Theoretical Biological Physics (Rice University)
    • Center for Theoretical Biological Physics, Rice University
    • University of Houston

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• Neighbourhood preference based energy function and its applications in structure prediction and protein evolution

  ORAL

  March 7, 2019, 10:24 AM – March 7, 2019, 10:36 AM

  Presenters

  • Haiguang Liu

    • complex systems division, beijing computational science research center

  Authors

  • siyuan liu

    • school of software engineering, university of science and technology of China

  • xilun xiang

    • school of software engineering, university of science and technology of China

  • Haiguang Liu

    • complex systems division, beijing computational science research center

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• Protein Structure Prediction with MELD x MD

  ORAL

  March 7, 2019, 10:36 AM – March 7, 2019, 10:48 AM

  Presenters

  • James Robertson

    • Stony Brook University

  Authors

  • James Robertson

    • Stony Brook University

  • Alberto Perez

    • Stony Brook University (currently University of Florida)

  • Ken Dill

    • Stony Brook University

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• Dynamic Allosteric Residue Coupling <i>(darc) </i>Spots Shed Light on Functional Changes from Sequence Variation

  ORAL

  March 7, 2019, 10:48 AM – March 7, 2019, 11:00 AM

  Presenters

  • Paul Campitelli

    • Center for Biological Physics, Arizona State University

  Authors

  • Paul Campitelli

    • Center for Biological Physics, Arizona State University

  • Liskin Swint-Kruse

    • Department of Biochemistry and Molecular Biology, The University of Kansas Medical Center

  • Banu Ozkan

    • Center for Biological Physics, Arizona State University

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