Systems Biology and Stochasticity in Biological Networks

Presentations

• The effects of the circadian clock on cell cycle regulation in cyanobacteria

  ORAL

  March 6, 2019, 2:30 PM – March 6, 2019, 2:42 PM

  Presenters

  • Po-Yi Ho

    • Harvard University

  Authors

  • Po-Yi Ho

    • Harvard University

  • Ariel Amir

    • Harvard University
    • School of Engineering and Applied Sciences, Harvard University
    • School of Engineering and Applied Science, Harvard University

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• Molecular search for a target with a conformational change: First passage time approach

  ORAL

  March 6, 2019, 2:42 PM – March 6, 2019, 2:54 PM

  Presenters

  • Jaeoh Shin

    • Rice University

  Authors

  • Jaeoh Shin

    • Rice University

  • Anatoly Boris Kolomeisky

    • Chemistry, Rice University
    • Rice University
    • Department of Chemistry and Centre for Theoretical Biological Physics, Rice University

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• Timing in single cells: fundamental limits and mechanisms for noise suppression

  ORAL

  March 6, 2019, 2:54 PM – March 6, 2019, 3:06 PM

  Presenters

  • Ruoshi Yuan

    • Harvard Medical School

  Authors

  • Ruoshi Yuan

    • Harvard Medical School

  • Jiawei Yan

    • Harvard Medical School

  • Glenn Vinnicombe

    • University of Cambridge

  • Johan Paulsson

    • Harvard Medical School

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• Non-steady-state dynamics and growth optimization of scalable flux networks

  ORAL

  March 6, 2019, 3:06 PM – March 6, 2019, 3:18 PM

  Presenters

  • Wei-Hsiang Lin

    • Yale Univ

  Authors

  • Wei-Hsiang Lin

    • Yale Univ

  • Edo Kussell

    • Center of Genomic and Systems Biology, New York University

  • Christine Jacobs-Wagner

    • Yale Univ

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• Temporal precision of molecular events with regulation and feedback

  ORAL

  March 6, 2019, 3:18 PM – March 6, 2019, 3:30 PM

  Presenters

  • Shivam Gupta

    • Purdue University

  Authors

  • Shivam Gupta

    • Purdue University

  • Sean Fancher

    • Purdue University

  • Hendrik Korswagen

    • Hubrecht Institute

  • Andrew Mugler

    • Purdue University
    • Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA

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• Fluid effects in spatial gradient sensing

  ORAL

  March 6, 2019, 3:30 PM – March 6, 2019, 3:42 PM

  Presenters

  • Nicholas Licata

    • University of Michigan - Dearborn

  Authors

  • Nicholas Licata

    • University of Michigan - Dearborn

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• From structural to temporal and spatial hierarchies in heteroclinic networks

  ORAL

  March 6, 2019, 3:42 PM – March 6, 2019, 3:54 PM

  Presenters

  • Hildegard Meyer-Ortmanns

    • Physics and Earth Sciences, Jacobs University Bremen gGmbH
    • Jacobs University Bremen
    • Jacobs University Bremen, Germany

  Authors

  • Hildegard Meyer-Ortmanns

    • Physics and Earth Sciences, Jacobs University Bremen gGmbH
    • Jacobs University Bremen
    • Jacobs University Bremen, Germany

  • Maximilian Voit

    • Jacobs University Bremen

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• The Mechanosensory Hair Bundles of the Inner Ear Distinguish Sinusoidal Forces from Noise Best When They Oscillate Spontaneously but Remain on the Verge of Quiescence

  ORAL

  March 6, 2019, 3:54 PM – March 6, 2019, 4:06 PM

  Presenters

  • Daibhid O Maoileidigh

    • Stanford University

  Authors

  • Daibhid O Maoileidigh

    • Stanford University

  • Joshua D Salvi

    • Massachusetts General Hospital / McLean Hospital, Harvard University

  • Jim Hudspeth

    • Laboratory of Sensory Neuroscience, The Rockefeller University
    • Howard Hughes Medical Institute, Rockefeller University

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• Trade-off between organelle number and size fluctuations suggest that a limiting pool of building blocks biophysically constrains organelle biogenesis

  ORAL

  March 6, 2019, 4:06 PM – March 6, 2019, 4:18 PM

  Presenters

  • Kiandokht Panjtan Amiri

    • Washington University, St. Louis

  Authors

  • Kiandokht Panjtan Amiri

    • Washington University, St. Louis

  • Asa Kalish

    • Washington University, St. Louis

  • Luke Nadell

    • Washington University, St. Louis

  • Shankar Mukherji

    • Washington University, St. Louis

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• Consequences of noise in bacterial communication

  ORAL

  March 6, 2019, 4:18 PM – March 6, 2019, 4:30 PM

  Presenters

  • Ghazaleh Ostovar

    • University of Southern California

  Authors

  • Ghazaleh Ostovar

    • University of Southern California

  • James Boedicker

    • University of Southern California

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• Optimal control of aging in complex networks

  ORAL

  March 6, 2019, 4:30 PM – March 6, 2019, 4:42 PM

  Presenters

  • Eric Sun

    • Harvard University

  Authors

  • Eric Sun

    • Harvard University

  • Thomas Michaels

    • Harvard University
    • Engineering and Applied Sciences, Harvard

  • L Mahadevan

    • Harvard University
    • SEAS, Harvard University
    • Paulson School of Engineering and Applied Sciences, Harvard University
    • Engineering and Applied Sciences, Harvard
    • John A. Paulson School Of Engineering And Applied Sciences, Harvard University
    • SEAS, Harvard
    • SEAS, Physics, OEB, Harvard University

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• Integrating epigenetics to construct gene regulatory networks

  ORAL

  March 6, 2019, 4:42 PM – March 6, 2019, 4:54 PM

  Presenters

  • Abhijeet Sonawane

    • Medicine, Harvard Medical School

  Authors

  • Abhijeet Sonawane

    • Medicine, Harvard Medical School

  • Kimberly Renee Glass

    • Medicine, Harvard Medical School

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• Kinetic PDE models of cell size control: size blow-up and evolution of growth rate

  ORAL

  March 6, 2019, 4:54 PM – March 6, 2019, 5:06 PM

  Presenters

  • Thomas Chou

    • Mathematics, UCLA

  Authors

  • Mingtao Xia

    • Mathematics, Peking University

  • Thomas Chou

    • Mathematics, UCLA

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• Exploiting a Percolation Transition for the Clustering of Noisy Gene Expression Data

  ORAL

  March 6, 2019, 5:06 PM – March 6, 2019, 5:18 PM

  Presenters

  • Steffen Werner

    • AMOLF

  Authors

  • Steffen Werner

    • AMOLF

  • Tom S Shimizu

    • AMOLF
    • Deparment of Living Matter, AMOLF

  • Greg Stephens

    • Physics, Vrije Universiteit & OIST Graduate University
    • Physics, Vrije Univ (Free Univ) Amsterdam
    • Vrije Universiteit (Amsterdam) & OIST Graduate University (Okinawa)
    • Vrije Universiteit

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• Dynamical network formation of <i>C. elegans</i>

  ORAL

  March 6, 2019, 5:18 PM – March 6, 2019, 5:30 PM

  Presenters

  • Ken Nagai

    • School of Materials Scienc, Japan Advanced Institute of Science and Technology

  Authors

  • Ken Nagai

    • School of Materials Scienc, Japan Advanced Institute of Science and Technology

  • Hiroshi Ito

    • Faculty of Design, Kyushu University

  • Takuma Sugi

    • Molecular Neuroscience Research Center, Shiga University of Medical Science

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