Inference, Information, and Learning in Biophysics II

Presentations

• Reconstructing biological dictionaries: How does neural code translate into behavior?

  ORAL

  March 5, 2019, 2:30 PM – March 5, 2019, 2:42 PM

  Presenters

  • Ilya Nemenman

    • Emory University
    • Physics, Emory University

  Authors

  • Damian Hernandez

    • Physics, Emory University
    • Centro Atómico Bariloche

  • Samuel Sober

    • Emory University

  • Ilya Nemenman

    • Emory University
    • Physics, Emory University

  View abstract →

• Learning to Crawl

  ORAL

  March 5, 2019, 2:42 PM – March 5, 2019, 2:54 PM

  Presenters

  • Shruti Mishra

    • Harvard University

  Authors

  • Shruti Mishra

    • Harvard University

  • Willem Marinus Van Rees

    • Massachusetts Institute of Technology
    • Mechanical Engineering, Massachusetts Institute of Technology

  • Lakshminarayanan Mahadevan

    • Department of Physics, Harvard University
    • Harvard University
    • John A. Paulson School of Engineering and Applied Sciences, Harvard University
    • SEAS, Physics, OEB, Harvard University

  View abstract →

• Non-Gaussian Bayesian theory of sensorimotor learning with multiple timescales

  ORAL

  March 5, 2019, 2:54 PM – March 5, 2019, 3:06 PM

  Presenters

  • Baohua Zhou

    • Emory University

  Authors

  • Baohua Zhou

    • Emory University

  • David Hofmann

    • Emory University

  • Samuel Sober

    • Emory University

  • Ilya Nemenman

    • Emory University
    • Physics, Emory University

  View abstract →

• Structure from noise: Mental errors yield abstract representations of events

  ORAL

  March 5, 2019, 3:06 PM – March 5, 2019, 3:18 PM

  Presenters

  • Christopher Lynn

    • University of Pennsylvania

  Authors

  • Christopher Lynn

    • University of Pennsylvania

  • Ari E Kahn

    • University of Pennsylvania

  • Danielle Bassett

    • University of Pennsylvania

  View abstract →

• Can vocalizations predict mating pairs in a society of songbirds? A maximum-entropy Ising model approach

  ORAL

  March 5, 2019, 3:18 PM – March 5, 2019, 3:30 PM

  Presenters

  • Eve Armstrong

    • University of Pennsylvania

  Authors

  • Eve Armstrong

    • University of Pennsylvania

  • Clelia de Mulatier

    • University of Pennsylvania

  • David White

    • Wilfred Laurier University

  • Marc Schmidt

    • University of Pennsylvania

  • Vijay Balasubramanian

    • Physics, University of Pennsylvania, Philadelphia, PA, USA
    • University of Pennsylvania

  View abstract →

• Analytical corrections to entropy for under-sampled discrete distributions.

  ORAL

  March 5, 2019, 3:30 PM – March 5, 2019, 3:42 PM

  Presenters

  • Ahmed Roman

    • Physics, Emory University

  Authors

  • Damian Hernandez

    • Physics, Emory University
    • Centro Atómico Bariloche

  • Ahmed Roman

    • Physics, Emory University

  • Ilya Nemenman

    • Emory University
    • Physics, Emory University

  View abstract →

• Inferring geometric embeddings for single cell data

  ORAL

  March 5, 2019, 3:42 PM – March 5, 2019, 3:54 PM

  Presenters

  • Mor Nitzan

    • Harvard University

  Authors

  • Mor Nitzan

    • Harvard University

  • Nikos Karaiskos

    • Max Delbruck Center for Molecular Medicine

  • Nir Friedman

    • The Hebrew University of Jerusalem

  • Nikolaus Rajewsky

    • Max Delbruck Center for Molecular Medicine

  View abstract →

• Interpreting time series data from dynamic signaling pathways in single cells

  ORAL

  March 5, 2019, 3:54 PM – March 5, 2019, 4:06 PM

  Presenters

  • Weerapat Pittayakanchit

    • University of Chicago

  Authors

  • Weerapat Pittayakanchit

    • University of Chicago

  • Kabir Husain

    • James Franck Institute, University of Chicago
    • James Franck Institute
    • University of Chicago

  • Arvind Murugan

    • James Franck Institute, University of Chicago
    • James Franck Institute
    • physics, University of Chicago
    • University of Chicago

  View abstract →

• Learning image models for optimal information extraction: image registration from first principles

  ORAL

  March 5, 2019, 4:06 PM – March 5, 2019, 4:18 PM

  Presenters

  • Colin Clement

    • Cornell University

  Authors

  • Colin Clement

    • Cornell University

  • Matthew Bierbaum

    • Cornell University

  • James Patarasp Sethna

    • Cornell University

  View abstract →

• Stochastic Nonlinear Dynamics of Confined Cell Migration

  ORAL

  March 5, 2019, 4:18 PM – March 5, 2019, 4:30 PM

  Presenters

  • David Brückner

    • Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

  Authors

  • David Brückner

    • Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

  • Alexandra Fink

    • Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Christoph Schreiber

    • Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Joachim Rädler

    • Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Chase Broedersz

    • Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

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• Entropy-based idealization of complex single-molecule time trajectories from nanoelectronic biosensors: application to the detection and modeling of non-stationary molecular dynamics

  ORAL

  March 5, 2019, 4:30 PM – March 5, 2019, 4:42 PM

  Presenters

  • Mohamed OUQAMRA

    • Bionanoelectronics, Institute for Research in Immunology and Cancer Institute
    • Université de Montréal

  Authors

  • Mohamed OUQAMRA

    • Bionanoelectronics, Institute for Research in Immunology and Cancer Institute
    • Université de Montréal

  • Delphine Bouilly

    • Physics, Universite de Montreal
    • Université de Montréal
    • Bionanoelectronics, Institute for Research in Immunology and Cancer Institute

  View abstract →

• Predicting sequence-specific mutation rates in DNA

  ORAL

  March 5, 2019, 4:42 PM – March 5, 2019, 4:54 PM

  Presenters

  • Martha Villagran

    • Dept. of Physics and Texas Center for Superconductivity, University of Houston
    • Department of Physics and Texas Center for Superconductivity, University of Houston

  Authors

  • Martha Villagran

    • Dept. of Physics and Texas Center for Superconductivity, University of Houston
    • Department of Physics and Texas Center for Superconductivity, University of Houston

  • Nikolaos Mitsakos

    • Department of Mathematics, University of Houston

  • Ricardo Azevedo

    • Department of Biology and Biochemistry, University of Houston

  • John H Miller

    • Dept. of Physics and Texas Center for Superconductivity, University of Houston
    • Department of Physics and Texas Center for Superconductivity, University of Houston

  View abstract →

• The Effects of Non-Specific Binding Kinetics on Fluorescence Activated Cell Sorting (FACS)

  ORAL

  March 5, 2019, 4:54 PM – March 5, 2019, 5:06 PM

  Presenters

  • Bhaven Mistry

    • Biomathematics, UCLA

  Authors

  • Bhaven Mistry

    • Biomathematics, UCLA

  • Thomas Chou

    • Mathematics, UCLA

  View abstract →

• Reverse-time inference of targeted biological dynamics

  ORAL

  March 5, 2019, 5:06 PM – March 5, 2019, 5:18 PM

  Presenters

  • Nicolas Lenner

    • Max Planck Institute for Dynamics and Self-Organization

  Authors

  • Nicolas Lenner

    • Max Planck Institute for Dynamics and Self-Organization

  • Stephan Eule

    • Max Planck Institute for Dynamics and Self-Organization

  • Fred Wolf

    • Max Planck Institute for Dynamics and Self-Organization

  View abstract →

• Information flow and the accuracy of concentration measurements in a genetic network

  ORAL

  March 5, 2019, 5:18 PM – March 5, 2019, 5:30 PM

  Presenters

  • Marianne Bauer

    • Princeton University

  Authors

  • Marianne Bauer

    • Princeton University

  • William Bialek

    • Physics, Princeton University and The CUNY Graduate Center
    • Princeton University

  • Thomas Gregor

    • Physics, Princeton University and Institut Pasteur
    • Princeton University

  • Mariela D Petkova

    • Biophysics, Harvard University

  • Eric Wieschaus

    • Molecular Biology, Princeton University
    • Princeton University

  View abstract →