Biopolymers II (DNA, RNA, Biocompatible, Gels)

Presentations

• The Mechanism of DNA Junction Melting

  ORAL

  March 4, 2019, 2:30 PM – March 4, 2019, 2:42 PM

  Presenters

  • Abraham Kipnis

    • Physics Department, Wesleyan University, Middletown, CT

  Authors

  • Abraham Kipnis

    • Physics Department, Wesleyan University, Middletown, CT

  • Ishita Mukerji

    • Physics Department, Wesleyan University, Middletown, CT

  • Francis Starr

    • Wesleyan University
    • Department of Physics, Wesleyan University
    • Department of of Physics, Wesleyan University
    • Physics Department, Wesleyan University, Middletown, CT

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• Dynamic conversion of RNA in crowded environments: implication of significance of micro-viscosity against molecular confinement

  ORAL

  March 4, 2019, 2:42 PM – March 4, 2019, 2:54 PM

  Presenters

  • Joon Ho Roh

    • University of Maryland, College Park

  Authors

  • Joon Ho Roh

    • University of Maryland, College Park

  • Madhusudan Tyagi

    • NIST Center for Neutron Research
    • Center for Neutron Research, National Institute of Standards and Technology

  • Sarah A Woodson

    • Biophysics, Johns Hopkins University

  • Joseph Curtis

    • Center for Neutron Research, National Institute of Standards and Technology

  • Robert M Briber

    • University of Maryland, College Park

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• Diffusion and Conformational Dynamics of Linear and Circular DNA in Crosslinked Cytoskeleton Composites

  ORAL

  March 4, 2019, 2:54 PM – March 4, 2019, 3:06 PM

  Presenters

  • Kathryn Regan

    • University of San Diego

  Authors

  • Kathryn Regan

    • University of San Diego

  • Devynn Wulstein

    • University of San Diego

  • Shea Ricketts

    • University of San Diego
    • Physics, University of San Diego

  • Ryan J. McGorty

    • University of San Diego
    • Univ of San Diego
    • Department of Physics and Biophysics, University of San Diego

  • Rae Robertson-Anderson

    • University of San Diego
    • Physics, University of San Diego
    • Physics and Biophysics, University of San Diego

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• Binding of oligos to DNA secondary structures

  ORAL

  March 4, 2019, 3:06 PM – March 4, 2019, 3:18 PM

  Presenters

  • Olivia Zou

    • Brandeis University

  Authors

  • Olivia Zou

    • Brandeis University

  • Shira Rosenberg

    • Brandeis University

  • William B Rogers

    • Physics, Brandeis University
    • Brandeis University

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• Molecular Dynamics Simulation of Supercoiled DNA with Mismatched Base Pair-Probing the Role of Structural Defect on Plectoneme Pinning

  ORAL

  March 4, 2019, 3:18 PM – March 4, 2019, 3:30 PM

  Presenters

  • Parth Rakesh Desai

    • University of Maryland, College Park
    • Department of Mechanical Engineering, University of Maryland, College Park

  Authors

  • Parth Rakesh Desai

    • University of Maryland, College Park
    • Department of Mechanical Engineering, University of Maryland, College Park

  • Siddhartha Das

    • University of Maryland, College Park
    • Department of Mechanical Engineering, University of Maryland, College Park

  • Keir C Neuman

    • NHLBI, National Institute of Health

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• Mechanical Properties of DNA Replication

  ORAL

  March 4, 2019, 3:30 PM – March 4, 2019, 3:42 PM

  Presenters

  • Stuart Sevier

    • MIT

  Authors

  • Stuart Sevier

    • MIT

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• Quantifying free energy pathways of competitive DNA-ligand interactions

  ORAL

  March 4, 2019, 3:42 PM – March 4, 2019, 3:54 PM

  Presenters

  • Ali Almaqwashi

    • King Abdulaziz University

  Authors

  • Ali Almaqwashi

    • King Abdulaziz University

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• Looping and Clustering: a statistical physics approach to protein-DNA complexes in bacteria

  ORAL

  March 4, 2019, 3:54 PM – March 4, 2019, 4:06 PM

  Presenters

  • Nils-Ole Walliser

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)

  Authors

  • Jean-Charles Walter

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Université de Montpellier
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)
    • CNRS

  • Nils-Ole Walliser

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)

  • Gabriel David

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)

  • Jérôme Dorignac

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)
    • Université de Montpellier

  • Frédéric Geniet

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)
    • Université de Montpellier

  • John Palmeri

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)
    • CNRS

  • Andrea Parmeggiani

    • Laboratoire Charles Coulomb (L2C), CNRS, Univ. Montpellier, Montpellier, France
    • Laboratoire Charles Coulomb (L2C), Université de Montpellier (France)
    • Université de Montpellier

  • Ned Wingreen

    • Lewis-Sigler Institute for Integrative Genomics, Princeton University
    • Princeton University
    • Department of Molecular Biology, Princeton University
    • Department of Molecular Biology and Lewis-Sigler Institute for Integrative Genomics, Princeton University

  • Chase Broedersz

    • Ludwig Maximilian University of Munich
    • Arnold Sommerfeld Center for Theoretical Physics, Ludwig-Maximilians-Universität München
    • Arnold Sommerfeld Center for Theoretical Physics, Ludwig-Maximilians University of Munich
    • Arnold -Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-Universität München
    • Arnold Sommerfeld Center for Theoretical Physics and Center for Nanoscience, Ludwig-Maximilian-Universität München, D-80333 München, Germany
    • Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-Universitaet Muenchen (Germany)
    • Physics, LMU Munich

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• Coarse-grained molecular simulation studies of effect of solvent quality on melting thermodynamics of oligonucleic acids (ONA) and ONA-polymer conjugates

  ORAL

  March 4, 2019, 4:06 PM – March 4, 2019, 4:18 PM

  Presenters

  • Prhashanna Ammu

    • Chemical & Biomolecular Engineering, University of Delaware

  Authors

  • Prhashanna Ammu

    • Chemical & Biomolecular Engineering, University of Delaware

  • Arthi Jayaraman

    • University of Delaware
    • Department of Chemical & Biomolecular Engineering, University of Delaware
    • Chemical & Biomolecular Engineering, University of Delaware

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• Terahertz Spectroscopic Study on Protein Myoglobin: Polymer-Like Behavior of Vibrational Density of States

  ORAL

  March 4, 2019, 4:18 PM – March 4, 2019, 4:30 PM

  Presenters

  • Leona Motoji

    • Division of Materials Science, University of Tsukuba

  Authors

  • Leona Motoji

    • Division of Materials Science, University of Tsukuba

  • Tatsuya Mori

    • Division of Materials Science, University of Tsukuba

  • Yasuhiro Fujii

    • Department of Physical Sciences, Ritsumeikan University

  • Akitoshi Koreeda

    • Department of Physical Sciences, Ritsumeikan University

  • Yue Jiang

    • Division of Materials Science, University of Tsukuba

  • Kentaro Shiraki

    • Division of Materials Science, University of Tsukuba

  • Yohei Yamamoto

    • Division of Materials Science, University of Tsukuba

  • Seiji Kojima

    • Division of Materials Science, University of Tsukuba

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• Dynamics of supercoiled knotted DNA: largescale rearrangements and persistent multistrand interlocking

  ORAL

  March 4, 2019, 4:30 PM – March 4, 2019, 4:42 PM

  Presenters

  • Lucia Coronel

    • International School for Advanced Studies

  Authors

  • Lucia Coronel

    • International School for Advanced Studies

  • Antonio Suma

    • Temple University

  • Cristian Micheletti

    • International School for Advanced Studies

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• Fast combinatorial nanofluidic device for the dynamic study of biomolecular interactions

  ORAL

  March 4, 2019, 4:42 PM – March 4, 2019, 4:54 PM

  Presenters

  • Saroj Dangi

    • North Carolina State University

  Authors

  • Saroj Dangi

    • North Carolina State University

  • Parminder Kaur

    • North Carolina State University

  • Hai Pan

    • North Carolina State University

  • Hong Wang

    • North Carolina State University

  • Robert Riehn

    • North Carolina State University

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• Multiscale Modeling of DNA Translocation through Multiple Nanopores

  ORAL

  March 4, 2019, 4:54 PM – March 4, 2019, 5:06 PM

  Presenters

  • Towfiq Ahmed

    • Los Alamos National Laboratory

  Authors

  • Towfiq Ahmed

    • Los Alamos National Laboratory

  • Aniket Bhattacharya

    • Department of Physics, University of Central Florida
    • University of Central Florida
    • Physics Department, University of Central Florida

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• DNA-based molecular force sensors in reconstituted actin networks

  ORAL

  March 4, 2019, 5:06 PM – March 4, 2019, 5:18 PM

  Presenters

  • Christina Jayachandran

    • Third Institute of Physics - Biophysics, University of Göttingen, 37077 Göttingen, Germany

  Authors

  • Christina Jayachandran

    • Third Institute of Physics - Biophysics, University of Göttingen, 37077 Göttingen, Germany

  • Max Wardetzky

    • Institute of Numerical and Applied Mathematics, University of Göttingen, 37077 Göttingen, Germany

  • Florian Rehfeldt

    • Third Institute of Physics - Biophysics, University of Göttingen, 37077 Göttingen, Germany
    • 3rd Institute of Physics - Biophysics, University of Göttingen

  • Christoph F. Schmidt

    • Department of Physics, Duke University
    • Duke University
    • Third Institute of Physics - Biophysics, University of Göttingen, 37077 Göttingen, Germany, Department of Physics,Duke University, Durham, NC 27708, USA

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