Inference and Stochastic Processes in Biophysics

Presentations

• Quantifying the invisible: Bayesian approaches in fluorescence microscopy

  Invited

  March 5, 2018, 8:00 AM – March 5, 2018, 8:36 AM

  Presenters

  • Ioannis Sgouralis

    • Physics, Arizona State Univ
    • Center for Biological Physics, Arizona State University

  Authors

  • Ioannis Sgouralis

    • Physics, Arizona State Univ
    • Center for Biological Physics, Arizona State University

  View abstract →

• Biophysical inference mechanisms face a trade-off between external and internal noise resistance

  ORAL

  March 5, 2018, 8:36 AM – March 5, 2018, 8:48 AM

  Presenters

  • Weerapat Pittayakanchit

    • University of Chicago

  Authors

  • Weerapat Pittayakanchit

    • University of Chicago

  • Zhiyue Lu

    • University of Chicago

  • Justin Chew

    • University of Chicago

  • Michael Rust

    • University of Chicago

  • Arvind Murugan

    • Physics, University of Chicago
    • University of Chicago
    • James Franck Institute, University of Chicago

  View abstract →

• Inference of mechanical stresses within the actively migrating cell sheet

  ORAL

  March 5, 2018, 8:48 AM – March 5, 2018, 9:00 AM

  Presenters

  • Yoav Green

    • Harvard University

  Authors

  • Yoav Green

    • Harvard University

  • James Butler

    • Harvard University

  • Jeffery Fredberg

    • Harvard University

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• Inference of Network Connectivity from Dynamics

  ORAL

  March 5, 2018, 9:00 AM – March 5, 2018, 9:12 AM

  Presenters

  • Emily SC Ching

    • Department of Physics, The Chinese University of Hong Kong

  Authors

  • Emily SC Ching

    • Department of Physics, The Chinese University of Hong Kong

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• Adaptive trust in internal models alleviates trade-offs in biophysical inference of the environment

  ORAL

  March 5, 2018, 9:12 AM – March 5, 2018, 9:24 AM

  Presenters

  • Arvind Murugan

    • Physics, University of Chicago
    • University of Chicago
    • James Franck Institute, University of Chicago

  Authors

  • Amir Bitran

    • Harvard University

  • Ofer Kimchi

    • Biophysics, Harvard University
    • Harvard University

  • Mirna Kramar

    • Max Planck Institute for Dynamics and Self-Organization

  • Amanda Parker

    • University of California, Davis

  • Ching-Hao Wang

    • Physics, Boston Univ
    • Boston University

  • Gopal Pattanayak

    • University of Chicago

  • Michael Rust

    • University of Chicago

  • Arvind Murugan

    • Physics, University of Chicago
    • University of Chicago
    • James Franck Institute, University of Chicago

  View abstract →

• Bayesian nonparametrics for biophysics

  ORAL

  March 5, 2018, 9:24 AM – March 5, 2018, 9:36 AM

  Presenters

  • Steve Presse

    • Univ of California - San Francisco
    • Physics and School of Molecular Sciences, Arizona State University

  Authors

  • Steve Presse

    • Univ of California - San Francisco
    • Physics and School of Molecular Sciences, Arizona State University

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• Progress in estimation of mutual information for real-valued data

  ORAL

  March 5, 2018, 9:36 AM – March 5, 2018, 9:48 AM

  Presenters

  • Ilya Nemenman

    • Emory Univ
    • Emory University
    • Department of Physics, Department of Biology, Emory University

  Authors

  • Caroline Holmes

    • Princeton Univ

  • Ilya Nemenman

    • Emory Univ
    • Emory University
    • Department of Physics, Department of Biology, Emory University

  View abstract →

• The Limitations of Model-Based Experimental Design and Parameter Estimation in Sloppy Systems

  ORAL

  March 5, 2018, 9:48 AM – March 5, 2018, 10:00 AM

  Presenters

  • Mark Transtrum

    • Physics & Astronomy, Brigham Young University

  Authors

  • Mark Transtrum

    • Physics & Astronomy, Brigham Young University

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• Data-Driven Inference for Jump-Diffusion Models of Neuroscientific Data

  ORAL

  March 5, 2018, 10:00 AM – March 5, 2018, 10:12 AM

  Presenters

  • Alexandre Melanson

    • Physics, University of Ottawa

  Authors

  • Alexandre Melanson

    • Physics, University of Ottawa

  • Andre Longtin

    • Physics, University of Ottawa

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• Multilevel Bayesian Analysis of Biophysical Data in the Presence of Model Inadequacy and Measurement Error

  ORAL

  March 5, 2018, 10:12 AM – March 5, 2018, 10:24 AM

  Presenters

  • Amir Shahmoradi

    • Univ of Texas, Austin

  Authors

  • Amir Shahmoradi

    • Univ of Texas, Austin

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• Rational Ignorance: Simpler Models Learn More Information from Finite Data

  ORAL

  March 5, 2018, 10:24 AM – March 5, 2018, 10:36 AM

  Presenters

  • Henry Mattingly

    • Molecular, Cellular, and Developmental Biology, Yale University

  Authors

  • Henry Mattingly

    • Molecular, Cellular, and Developmental Biology, Yale University

  • Mark Transtrum

    • Physics and Astronomy, Brigham Young Univ - Provo
    • Department of Physics and Astronomy, Brigham Young University

  • Michael Abbott

    • Institute of Physics, Jagiellonian University

  • Benjamin Machta

    • Physics, Yale University
    • Department of Physics and Systems Biology Institute, Yale University

  View abstract →

• Inference of Transition Rates in a Birth-Death Chain from Conditional Exit Times

  ORAL

  March 5, 2018, 10:36 AM – March 5, 2018, 10:48 AM

  Presenters

  • Pak-Wing Fok

    • Mathematical Sciences, University of Delaware

  Authors

  • Pak-Wing Fok

    • Mathematical Sciences, University of Delaware

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• Density of isolated particles and the hydrodynamic limit of generalized TASEP models: Application to mRNA translation rate inference

  ORAL

  March 5, 2018, 10:48 AM – March 5, 2018, 11:00 AM

  Presenters

  • Khanh Dao Duc

    • Computer Science, UC Berkeley

  Authors

  • Khanh Dao Duc

    • Computer Science, UC Berkeley

  • Dan Erdmann-Pham

    • Mathematics, UC Berkeley

  • Yun Song

    • Computer Science and Statistics, UC Berkeley

  View abstract →