Knotted Biomolecules

Presentations

• Dynamics of Knot Relaxation in Stretched DNA

  ORAL

  March 17, 2017, 8:00 AM – March 17, 2017, 8:12 AM

  Authors

  • Alexander Klotz

    • MIT

  • Vivek Narsimhan

    • MIT

  • Beatrice Soh

    • MIT

  • Patrick Doyle

    • MIT
    • BioSyM IRG, SMART Centre, Singapore; Department of Chemical Engineering, MIT, Cambridge, MA, USA

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• Knotting of long DNA molecules confined to nanochannels close to the persistence length

  ORAL

  March 17, 2017, 8:12 AM – March 17, 2017, 8:24 AM

  Authors

  • Kevin D. Dorfman

    • University of Minnesota - Twin Cities, Department of Chemical Engineering and Materials Science
    • Univ of Minn - Minneapolis
    • University of Minnesota
    • University of Minnesota - Twin Cities
    • Univ of Minnesota - Twin Cities
    • Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minnesota, USA

  • Aashish Jain

    • Univ of Minn - Minneapolis

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• Spatial variation of knotting free energy and knot interactions in a knot factory on chip

  ORAL

  March 17, 2017, 8:24 AM – March 17, 2017, 8:36 AM

  Authors

  • Susan Amin

    • McGill University

  • Ahmed Khorshid

    • McGill University

  • Lili Zeng

    • McGill University

  • Philip Zimny

    • McGill University

  • Walter Reisner

    • McGill University
    • McGill University, Canada

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• Pierced Lasso Proteins

  COFFEE_KLATCH · Invited

  March 17, 2017, 8:36 AM – March 17, 2017, 9:12 AM

  Authors

  • Patricia Jennings

    • Univ of California - San Diego

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• Understanding of knots in polymers by a unified theory

  ORAL

  March 17, 2017, 9:12 AM – March 17, 2017, 9:24 AM

  Authors

  • Liang Dai

    • Singapore-MIT Alliance for Research and Technology
    • BioSystems and Micromechanics (BioSyM) IRG, Singapore-MIT Alliance for Research and Technology (SMART) Centre, 138602, Singapore

  • Patrick Doyle

    • MIT
    • BioSyM IRG, SMART Centre, Singapore; Department of Chemical Engineering, MIT, Cambridge, MA, USA

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• RACER a Coarse-Grained RNA Model for Capturing Folding Free Energy in Molecular Dynamics Simulations

  ORAL

  March 17, 2017, 9:24 AM – March 17, 2017, 9:36 AM

  Authors

  • Sara Cheng

    • University of Texas at Austin

  • David Bell

    • University of Texas at Austin

  • Pengyu Ren

    • University of Texas at Austin

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• Resolving DNA-ligand intercalation in the entropic stretching regime

  ORAL

  March 17, 2017, 9:36 AM – March 17, 2017, 9:48 AM

  Authors

  • Ali A. Almaqwashi

    • King Abdulaziz University

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• Dynamic Coarse-Graining of DNA Melting Kinetics: Enthalpic and Entropic Effects of Cooperative Base-Pair Dynamics

  ORAL

  March 17, 2017, 9:48 AM – March 17, 2017, 10:00 AM

  Authors

  • Sebastian Sensale

    • University of Notre Dame

  • Zhangli Peng

    • University of Notre Dame

  • Hsueh-Chia Chang

    • University of Notre Dame

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• Design Of Novel Magnetic Tweezers And Its Use For Studying DNA-Compacting Proteins

  ORAL

  March 17, 2017, 10:00 AM – March 17, 2017, 10:12 AM

  Authors

  • Roberto Fabian

    • Physics Department, Vitreous State Laboratory, The Catholic University of America, Washington DC 20064

  • Christopher Tyson

    • Biomedical Engineering Department, Vitreous State Laboratory, The Catholic University of America, Washington DC 20064

  • Anneliese Striz

    • Biology Department, The Catholic University of America, Washington DC 20064

  • Pamela Tuma

    • Biology Department, The Catholic University of America, Washington DC 20064

  • Ian Pegg

    • Physics Department, Vitreous State Laboratory, The Catholic University of America, Washington DC 20064

  • Abhijit Sarkar

    • Physics Department, Vitreous State Laboratory, The Catholic University of America, Washington DC 20064

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• DNA -- peptide polyelectrolyte complexes: Phase control by hybridization

  ORAL

  March 17, 2017, 10:12 AM – March 17, 2017, 10:24 AM

  Authors

  • Jeffrey Vieregg

    • University of Chicago

  • Michael Lueckheide

    • University of Chicago

  • Amanda Marciel

    • University of Chicago
    • The University of Chicago

  • Lorraine Leon

    • University of Chicago

  • Matthew Tirrell

    • University of Chicago
    • The University of Chicago
    • IME, The University of Chicago
    • Univ of Chicago

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• Genomic Mapping of Human DNA provides Evidence of Difference in Stretch between AT and GC rich regions

  ORAL

  March 17, 2017, 10:24 AM – March 17, 2017, 10:36 AM

  Authors

  • Jeffrey Reifenberger

    • BioNano Genomics

  • Kevin D. Dorfman

    • University of Minnesota - Twin Cities, Department of Chemical Engineering and Materials Science
    • Univ of Minn - Minneapolis
    • University of Minnesota
    • University of Minnesota - Twin Cities
    • Univ of Minnesota - Twin Cities
    • Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minnesota, USA

  • Han Cao

    • BioNano Genomics

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• Droplet Microfluidics for Compartmentalized Cell Lysis and Extension of DNA from Single-Cells

  ORAL

  March 17, 2017, 10:36 AM – March 17, 2017, 10:48 AM

  Authors

  • Philip Zimny

    • McGill University

  • David Juncker

    • McGill University

  • Walter Reisner

    • McGill University
    • McGill University, Canada

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• The Extended Core Coax: A novel nanoarchitecture for lab-on-a-chip electrochemical diagnostics

  ORAL

  March 17, 2017, 10:48 AM – March 17, 2017, 11:00 AM

  Authors

  • Amy E. Valera

    • Boston College

  • Luke D'Imperio

    • Boston College
    • Department of Physics, Boston College, Chestnut Hill, Massachusetts 02467, USA.

  • M. J. Burns

    • Boston College
    • Department of Physics, Boston College, Chestnut Hill, Massachusetts 02467, USA.

  • M. J. Naughton

    • Boston College
    • Department of Physics, Boston College, Chestnut Hill, Massachusetts 02467, USA.

  • Thomas C. Chiles

    • Boston College

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