Biological Networks

Presentations

• Adaptation, Growth, and Resilience in Biological Distribution Networks

  ORAL

  March 16, 2017, 2:30 PM – March 16, 2017, 2:42 PM

  Authors

  • Henrik Ronellenfitsch

    • Department of Physics and Astronomy, University of Pennsylvania
    • Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, USA

  • Eleni Katifori

    • University of Pennsylvania
    • Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, USA

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• Dynamic response of gene regulatory networks: A case study of heat shock regulation in Escherichia coli

  ORAL

  March 16, 2017, 2:42 PM – March 16, 2017, 2:54 PM

  Authors

  • Pradeep Kumar

    • Univ of Arkansas-Fayetteville
    • Department of Physics, University of Arkansas Fayetteville AR 72701
    • University of Arkansas
    • University of Arkansas, Fayetteville

  • Venkata Krishnamurthi

    • Department of Physics, University of Arkansas Fayetteville AR 72701

  • Sudip Nepal

    • Univ of Arkansas-Fayetteville
    • Department of Physics, University of Arkansas Fayetteville AR 72701

  • Khanh Nguyen

    • Department of Physics, University of Arkansas Fayetteville AR 72701
    • University of Arkansas

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• Compensatory interactions to stabilize multiple steady states or mitigate the effects of multiple deregulations in biological networks

  ORAL

  March 16, 2017, 2:54 PM – March 16, 2017, 3:06 PM

  Authors

  • Gang Yang

    • Pennsylvania State University

  • Colin Campbell

    • Washington College

  • Réka Albert

    • Pennsylvania State University

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• Detecting Functional Structures in E. coli Gene Networks from Expression Data

  ORAL

  March 16, 2017, 3:06 PM – March 16, 2017, 3:18 PM

  Authors

  • Tianlong Chen

    • Department of Physics, Univ of Houston

  • Madeleine Opitz

    • Center for NanoScience, Faculty of Physics, Ludwig-Maximilians-Universit\"{a}t M\"{u}nchen

  • Kevin E. Bassler

    • Department of Physics, Univ of Houston
    • Department of Physics, University of Houston

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• A Regulatory Network Analysis of Orphan Genes in Arabidopsis Thaliana

  ORAL

  March 16, 2017, 3:18 PM – March 16, 2017, 3:30 PM

  Authors

  • Pramesh Singh

    • Department of Physics, University of Houston

  • Tianlong Chen

    • Department of Physics, University of Houston

  • Zebulun Arendsee

    • Center for Metabolic Biology, Bioinformations and Computational Biology, Iowa State University

  • Eve S. Wurtele

    • Center for Metabolic Biology, Iowa State University

  • Kevin E. Bassler

    • Department of Physics, University of Houston

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• Noise-induced relations between network connectivity and dynamics

  ORAL

  March 16, 2017, 3:30 PM – March 16, 2017, 3:42 PM

  Authors

  • Emily SC Ching

    • The Chinese University of Hong Kong

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• Universality, criticality and scaling in biochemical networks with feedback

  ORAL

  March 16, 2017, 3:42 PM – March 16, 2017, 3:54 PM

  Authors

  • Tommy Byrd

    • Physics Department, Purdue University, West Lafayette IN, USA

  • Amir Erez

    • Center for Cancer Research, National Cancer Institute, Bethesda MD, USA

  • Andrew Mugler

    • Physics Department, Purdue University, West Lafayette IN, USA
    • Purdue Univ

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• Temperature dependence of the multistability of lactose utilization network of Escherichia coli

  ORAL

  March 16, 2017, 3:54 PM – March 16, 2017, 4:06 PM

  Authors

  • Sudip Nepal

    • Univ of Arkansas-Fayetteville
    • Department of Physics, University of Arkansas Fayetteville AR 72701

  • Pradeep Kumar

    • Univ of Arkansas-Fayetteville
    • Department of Physics, University of Arkansas Fayetteville AR 72701
    • University of Arkansas
    • University of Arkansas, Fayetteville

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• Extinction Dynamics and Control in Adaptive Networks

  ORAL

  March 16, 2017, 4:06 PM – March 16, 2017, 4:18 PM

  Authors

  • Ira Schwartz

    • Naval Research Lab

  • Leah Shaw

    • College of William and Mary

  • Jason Hindes

    • Naval Research Lab

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• Effect of Temperature on Synthetic Positive and Negative Feedback Gene Networks

  ORAL

  March 16, 2017, 4:18 PM – March 16, 2017, 4:30 PM

  Authors

  • Daniel A. Charlebois

    • Laufer Center for Physical and Quantitative Biology, Stony Brook University

  • Sylvia Marshall

    • Laufer Center for Physical and Quantitative Biology, Department of Biochemistry, Stony Brook University

  • Gabor Balazsi

    • Laufer Center for Physical and Quantitative Biology, Department of Biomedical Engineering, Stony Brook University
    • The Louis & Beatrice Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY, USA

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• Stochastic dynamics of genetic broadcasting networks.

  ORAL

  March 16, 2017, 4:30 PM – March 16, 2017, 4:42 PM

  Authors

  • Davit Potoyan

    • Center for Theoretical Biological Physics, Rice University

  • Peter Wolynes

    • Center for Theoretical Biological Physics, Rice University

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• Luria-Delbrück Revisited: The Classic Experiment Doesn’t Rule out Lamarckian Evolution

  ORAL

  March 16, 2017, 4:42 PM – March 16, 2017, 4:54 PM

  Authors

  • Caroline Holmes

    • Emory University

  • Mahan Ghafari

    • Emory University

  • Anzar Abbas

    • Emory University

  • Varun Saravanan

    • Emory University

  • Ilya Nemenman

    • Emory University

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• Predicting genetic interactions between beneficial mutations from Fisher's geometric model

  ORAL

  March 16, 2017, 4:54 PM – March 16, 2017, 5:06 PM

  Authors

  • Sungmin Hwang

    • University of Cologne, Cologne, Germany

  • Sijmen SCHOUSTRA

    • Laboratory of Genetics, Wageningen University, Wageningen, The Netherlands

  • Joachim Krug

    • University of Cologne, Cologne, Germany

  • Arjan de Visser

    • Laboratory of Genetics, Wageningen University, Wageningen, The Netherlands

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