Physics of Genome Organization: from DNA to Chromatin I

Presentations

• Escherichia coli chromosomal loci segregate from midcell with universal dynamics

  COFFEE_KLATCH · Invited

  March 14, 2017, 11:15 AM – March 14, 2017, 11:51 AM

  Authors

  • Paul Wiggins

    • University of Washington

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• De~Novo~Chromosome Structure Prediction

  ORAL

  March 14, 2017, 11:51 AM – March 14, 2017, 12:03 PM

  Authors

  • Michele Di Pierro

    • Rice University

  • Ryan R. Cheng

    • Rice University

  • Erez Lieberman-Aiden

    • Baylor College of Medicine

  • Peter G. Wolynes

    • Rice University

  • Jose' N. Onuchic

    • Rice University

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• Chromosomal Organization by an Interplay of Loop Extrusion and Compartment Interaction

  ORAL

  March 14, 2017, 12:03 PM – March 14, 2017, 12:15 PM

  Authors

  • Johannes Nuebler

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Geoffrey Fudenberg

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Maxim Imakaev

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Carolyn Lu

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Anton Goloborodko

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Nezar Abdennur

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

  • Leonid Mirny

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA

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• Elucidating the role of transcription in shaping the 3D structure of the bacterial genome

  ORAL

  March 14, 2017, 12:15 PM – March 14, 2017, 12:27 PM

  Authors

  • Hugo B. Brandao

    • Graduate Program in Biophysics, Harvard University

  • Xindan Wang

    • Harvard Medical School

  • David Z. Rudner

    • Department of Microbiology and Immunobiology, Harvard Medical School

  • Leonid Mirny

    • Institute for Medical Engineering and Science, Massachusetts Institute of Technology

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• A Minimal Polymer Model Integrates an Inverted Nuclear Geometry with Conventional Hi-C Compartmentalization

  ORAL

  March 14, 2017, 12:27 PM – March 14, 2017, 12:39 PM

  Authors

  • Martin Falk

    • MIT

  • Natasha Naumova

    • UMass Medical

  • Geoffrey Fudenberg

    • MIT

  • Yana Feodorova

    • Medical University Plovdiv

  • Maxim Imakaev

    • Harvard Medical

  • Job Dekker

    • UMass Medical

  • Irina Solovei

    • LMU Munich

  • Leonid Mirny

    • MIT

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• A maximum entropy model for chromatin structure

  ORAL

  March 14, 2017, 12:39 PM – March 14, 2017, 12:51 PM

  Authors

  • Pau Farre

    • Simon Fraser University

  • Eldon Emberly

    • Simon Fraser University

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• The "self-stirred" genome: Bulk and surface dynamics of the~chromatin globule

  COFFEE_KLATCH · Invited

  March 14, 2017, 12:51 PM – March 14, 2017, 1:27 PM

  Authors

  • Alexandra Zidovska

    • Center for Soft Matter Research, Department of Physics, New York University

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• New insights into nucleosome positioning and spacing

  ORAL

  March 14, 2017, 1:27 PM – March 14, 2017, 1:39 PM

  Authors

  • Razvan Chereji

    • National Institutes of Health

  • Srinivas Ramachandran

    • Fred Hutchinson Cancer Research Center

  • Steven Henikoff

    • Fred Hutchinson Cancer Research Center

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• Exploring the Interplay between DNA Sequence, Histone Tails and Nucleosome Dynamics

  ORAL

  March 14, 2017, 1:39 PM – March 14, 2017, 1:51 PM

  Authors

  • Joshua Lequieu

    • University of Chicago

  • Andres Cordoba

    • University of Chicago

  • Juan de Pablo

    • University of Chicago
    • Institute for Molecular Engineering, University of Chicago
    • IME, The University of Chicago
    • Univ of Chicago

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• Mechanical properties of transription

  ORAL

  March 14, 2017, 1:51 PM – March 14, 2017, 2:03 PM

  Authors

  • Stuart Sevier

    • Rice University

  • Herbert Levine

    • Rice University

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• Spatial organization of chromatin domains and compartments in single chromosomes

  ORAL

  March 14, 2017, 2:03 PM – March 14, 2017, 2:15 PM

  Authors

  • Siyuan Wang

    • Harvard University

  • Jun-Han Su

    • Harvard University

  • Brian Beliveau

    • Harvard Medical School

  • Bogdan Bintu

    • Harvard University

  • Jeffrey Moffitt

    • Harvard University

  • Chao-ting Wu

    • Harvard Medical School

  • Xiaowei Zhuang

    • Harvard University

  View abstract →