Maximum Entropy Models: A Promising Link Between Statistical Physics, Inference, and Biology

Presentations

• Learning probabilities from random observables in high dimensions: the maximum entropy distribution and others

  ORAL

  March 15, 2016, 11:15 AM – March 15, 2016, 11:27 AM

  Authors

  • Tomoyuki Obuchi

    • Tokyo Institute of Technology

  • Simona Cocco

    • Laboratoire de Physique Statistique de l’Ecole Normale Superieure

  • Remi Monasson

    • Laboratoire de Physique Theorique de l’Ecole Normale Superieure

  View abstract →

• Semiparametric energy-based models of systems exhibiting criticality

  ORAL

  March 15, 2016, 11:27 AM – March 15, 2016, 11:39 AM

  Authors

  • Jan Humplik

    • Institute of Science and Technology Austria

  • Gasper Tkacik

    • Institute of Science and Technology Austria

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• From Maximum Entropy Models to Non-Stationarity and Irreversibility

  ORAL

  March 15, 2016, 11:39 AM – March 15, 2016, 11:51 AM

  Authors

  • Rodrigo Cofre

    • Department of Theoretical Physics, University of Geneva, Switzerland

  • Bruno Cessac

    • Inria, Neuromathcomp team

  • Cesar Maldonado

    • Centro de Modelamiento Matematico, Universidad de Chile

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• Learning Maximal Entropy Models from finite size datasets: a fast Data-Driven algorithm allows to sample from the posterior distribution.

  ORAL

  March 15, 2016, 11:51 AM – March 15, 2016, 12:03 PM

  Authors

  • Ulisse Ferrari

    • Institut de la Vision, Sorbonne Universit\' es, UPMC, INSERM U968, CNRS, UMR\_ 7210, Paris, F-75012, France.

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• UniEnt: uniform entropy model for the dynamics of a neuronal population

  ORAL

  March 15, 2016, 12:03 PM – March 15, 2016, 12:15 PM

  Authors

  • Damian Hernandez Lahme

    • Department of Physics, Emory University

  • Ilya Nemenman

    • Department of Physics, Emory University
    • Departments of Physics and Biology, Emory University
    • Emory Univ
    • Emory University
    • Department of Physics and Department of Biology, Emory University

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• Modeling the Mass Action Dynamics of Metabolism with Fluctuation Theorems and Maximum Entropy.

  ORAL

  March 15, 2016, 12:15 PM – March 15, 2016, 12:27 PM

  Authors

  • William Cannon

    • Pacific Northwest National Laboratory

  • Dennis Thomas

    • Pacific Northwest National Laboratory

  • Douglas Baxter

    • Pacific Northwest National Laboratory

  • Jeremy Zucker

    • Pacific Northwest National Laboratory

  • Garrett Goh

    • Pacific Northwest National Laboratory

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• On the sufficiency of pairwise interactions in maximum entropy models of networks

  ORAL

  March 15, 2016, 12:27 PM – March 15, 2016, 12:39 PM

  Authors

  • Ilya Nemenman

    • Department of Physics, Emory University
    • Departments of Physics and Biology, Emory University
    • Emory Univ
    • Emory University
    • Department of Physics and Department of Biology, Emory University

  • Lina Merchan

    • Savannah State University

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• Insights in connecting phenotypes in bacteria to coevolutionary information.

  ORAL

  March 15, 2016, 12:39 PM – March 15, 2016, 12:51 PM

  Authors

  • Ryan Cheng

    • Rice University

  • Faruck Morcos

    • University of Texas at Dallas

  • Ryan Hayes

    • University of Michigan

  • Rodney Helm

    • University of Houston

  • Herbert Levine

    • Rice University

  • Jose Onuchic

    • Rice University

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• Computational Amide I Spectroscopy for Refinement of Disordered Peptide Ensembles: Maximum Entropy and Related Approaches

  ORAL

  March 15, 2016, 12:51 PM – March 15, 2016, 1:03 PM

  Authors

  • Michael Reppert

    • Massachusetts Inst of Tech-MIT

  • Andrei Tokmakoff

    • The University of Chicago
    • University of Chicago

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• Coevolutionary modeling of protein sequences: Predicting structure, function, and mutational landscapes

  COFFEE_KLATCH · Invited

  March 15, 2016, 1:03 PM – March 15, 2016, 1:39 PM

  Authors

  • Martin Weigt

    • Universite Pierre et Marie Curie, Paris

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• Phase transitions in Hidden Markov Models

  ORAL

  March 15, 2016, 1:39 PM – March 15, 2016, 1:51 PM

  Authors

  • John Bechhoefer

    • Simon Fraser Univ
    • Simon Fraser University

  • Emma Lathouwers

    • Simon Fraser Univ

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• Distinguishing cell type using epigenotype

  ORAL

  March 15, 2016, 1:51 PM – March 15, 2016, 2:03 PM

  Authors

  • Thomas Wytock

    • Dept. Physics and Astronomy, Northwestern University

  • Adilson E Motter

    • Northwestern Unviersity
    • Northwestern University
    • Department of Physics and Astronomy, Northwestern University
    • Dept. Physics and Astronomy, Northwestern University

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• Can simple interactions capture complex features of neural activity underlying behavior in a virtual reality environment?

  ORAL

  March 15, 2016, 2:03 PM – March 15, 2016, 2:15 PM

  Authors

  • Leenoy Meshulam

    • Princeton Univeristy

  • Jeffrey Gauthier

    • Princeton Univeristy

  • Carlos Brody

    • Princeton Univeristy

  • David Tank

    • Princeton Univeristy

  • William Bialek

    • Princeton Univeristy

  View abstract →