Focus Session: Stochastic Model Inference

Presentations

• Integrating discrete stochastic models and single-cell experiments to infer predictive models of MAPK-induced transcription dynamics

  COFFEE_KLATCH · Invited

  March 4, 2015, 8:00 AM – March 4, 2015, 8:36 AM

  Authors

  • Brian Munsky

    • Colorado State University

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• Motor Switching Rates in Caulobacter Crescentus Follow First Passage Time Distribution

  ORAL

  March 4, 2015, 8:36 AM – March 4, 2015, 8:48 AM

  Authors

  • Jay Tang

    • Brown University

  • Michael Morse

    • Brown University

  • Jordan Bell

    • Brown University

  • Guanglai Li

    • Brown University

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• Consequences of Irreversibility in Fundamental Models of Transcription

  ORAL

  March 4, 2015, 8:48 AM – March 4, 2015, 9:00 AM

  Authors

  • Stuart Sevier

    • Rice University

  • Herbert Levine

    • Rice University

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• Variability and Reliabiltiy in Axon Growth Cone Navigation Decision Making

  ORAL

  March 4, 2015, 9:00 AM – March 4, 2015, 9:12 AM

  Authors

  • Marta Garnelo

    • Imperial College London

  • S\'ebastien G. Ricoult

    • McGill University

  • David Juncker

    • McGill University

  • Timothy E. Kennedy

    • McGill University

  • Aldo Faisal

    • Imperial College London
    • Dept. of Bioengineering, Dept. of Computing, Imperial College London, SW7 2AZ London, UK

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• Stability of a Random Walk Model for Fruiting Body Aggregation in M. xanthus

  ORAL

  March 4, 2015, 9:12 AM – March 4, 2015, 9:24 AM

  Authors

  • G.C. McKenzie-Smith

    • Bowdoin College

  • H.B. Sch\"{u}ttler

    • University of Georgia

  • C. Cotter

    • University of Georgia

  • L. Shimkets

    • University of Georgia

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• Single-cell analysis of transcription kinetics across the cell cycle

  ORAL

  March 4, 2015, 9:24 AM – March 4, 2015, 9:36 AM

  Authors

  • Samuel Skinner

    • Department of Biochemistry and Molecular Biology, Baylor College of Medicine; Center for Theoretical Biological Physics, Rice University

  • Heng Xu

    • Department of Biochemistry and Molecular Biology, Baylor College of Medicine; Center for Theoretical Biological Physics, Rice University

  • Sonal Jaiswal

    • Baylor College of Medicine

  • Pablo Freire

    • Baylor College of Medicine

  • Thomas Zwaka

    • Department for Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai

  • Ido Golding

    • Department of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign

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• Inference of protein diffusion probed via fluorescence correlation spectroscopy

  COFFEE_KLATCH · Invited

  March 4, 2015, 9:36 AM – March 4, 2015, 10:12 AM

  Authors

  • Konstantinos Tsekouras

    • IUPUI

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• Simple models do not explain early dynamics of {\em H.~influenzae} bacteremia

  ORAL

  March 4, 2015, 10:12 AM – March 4, 2015, 10:24 AM

  Authors

  • Xinxian Shao

    • Department of Physics, Emory University

  • Bruce Levin

    • Department of Biology, Emory University

  • Ilya Nemenman

    • Department of Physics, Emory University
    • Emory University

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• The Dynamics in Epithelial Cell Intercalation in Drosophila Morphogenesis

  ORAL

  March 4, 2015, 10:24 AM – March 4, 2015, 10:36 AM

  Authors

  • Fred Wolf

    • Max Planck Institute for Dynamics and Self-Organization
    • Max Planck Institute for Dynamics and Self-organization

  • Lars Reichl

    • Max Planck Institute for Dynamics and Self-Organization

  • Deqing Kong

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

  • Yujun Zhang

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

  • Stephan Eule

    • Max Planck Institute for Dynamics and Self-Organization

  • Jakob Metzger

    • Max Planck Institute for Dynamics and Self-Organization

  • J\"org Gro{\ss}hans

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

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• Stochastic Terminal Dynamics in Epithelial Cell Intercalation

  ORAL

  March 4, 2015, 10:36 AM – March 4, 2015, 10:48 AM

  Authors

  • Stephan Eule

    • Max Planck Institute for Dynamics and Self-Organization

  • Jakob Metzger

    • Max Planck Institute for Dynamics and Self-Organization

  • Lars Reichl

    • Max Planck Institute for Dynamics and Self-Organization

  • Deqing Kong

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

  • Yujun Zhang

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

  • Joerg Grosshans

    • Institute for Developmental Biochemistry, Medical School, University of G\"ottingen

  • Fred Wolf

    • Max Planck Institute for Dynamics and Self-Organization
    • Max Planck Institute for Dynamics and Self-organization

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• Methods for reconstructing sets of ordinary differential equations from time series data

  ORAL

  March 4, 2015, 10:48 AM – March 4, 2015, 11:00 AM

  Authors

  • Manuel Mai

    • Department of Physics, Yale University, New Haven, CT, USA

  • Corey O'Hern

    • Yale University
    • Department of Physics, Department of Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA

  • Mark Shattuck

    • The City College of New York
    • Benjamin Levich Institute and Physics Department, The City College of New York, New York, NY, USA
    • City College of New York

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