Nucleic Acids: Structure, Function, Protein Interactions

Presentations

• Stretching DNA molecules on a flexible substrate, a polarization-dependent fluorescence microscopy study

  ORAL

  March 20, 2013, 2:30 PM – March 20, 2013, 2:42 PM

  Authors

  • Ke Zhu

    • Stony Brook University, Stony Brook, NY

  • John Mele

    • Central Islip Senior High School, Central Islip, NY

  • Julia Budassi

    • Stony Brook University, Stony Brook, NY

  • Jonathon Sokolov

    • Stony Brook University, Stony Brook, NY

  View abstract →

• Controlled enzymatic cutting of DNA molecules adsorbed on surfaces using soft lithography

  ORAL

  March 20, 2013, 2:42 PM – March 20, 2013, 2:54 PM

  Authors

  • Alyssa Auerbach

    • Yeshiva University High School for Girls, Holliswood, NY

  • Julia Budassi

    • Stony Brook University, Stony Brook, NY

  • Emily Shea

    • Williams College, Williamstown, MA

  • Ke Zhu

    • Stony Brook University, Stony Brook, NY

  • Jonathan Sokolov

    • Stony Brook University, Stony Brook, NY

  View abstract →

• Localizing the critical point of random RNA secondary structures

  ORAL

  March 20, 2013, 2:54 PM – March 20, 2013, 3:06 PM

  Authors

  • William Baez

    • The Ohio State University

  • Ralf Bundschuh

    • The Ohio State University

  View abstract →

• Self-assembly of virus particles: The role of genome

  ORAL

  March 20, 2013, 3:06 PM – March 20, 2013, 3:18 PM

  Authors

  • Gonca Erdemci-Tandogan

    • Department of Physics and Astronomy, University of California, Riverside

  • Jef Wagner

    • Department of Physics and Astronomy, University of California, Riverside

  • Rudolf Podgornik

    • Department of Physics, University of Ljubljana

  • Roya Zandi

    • Department of Physics and Astronomy, University of California, Riverside
    • University of California, Riverside

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• Automated building of three-dimensional RNA structures

  ORAL

  March 20, 2013, 3:18 PM – March 20, 2013, 3:30 PM

  Authors

  • Yunjie Zhao

    • Department of Physics, Huazhong University of Science \& Technology; Department of Physics, George Washington University

  • Zhou Gong

    • Department of Physics, Huazhong University of Science \& Technology

  • Yangyu Huang

    • Department of Physics, Huazhong University of Science \& Technology

  • Yi Xiao

    • Department of Physics, Huazhong University of Science \& Technology

  • Chen Zeng

    • Department of Physics, George Washington University

  View abstract →

• Ion concentration dependent tRNA folding energy landscapes

  ORAL

  March 20, 2013, 3:30 PM – March 20, 2013, 3:42 PM

  Authors

  • Rongzhong Li

    • Department of Physics, Wake Forest University

  • Samuel Cho

    • Departments of Physics and Computer Science, Wake Forest University

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• Determination of counterion distribution around DNA coated nanoparticles (DNA-AuNP) by small angle X-ray scattering (SAXS)

  ORAL

  March 20, 2013, 3:42 PM – March 20, 2013, 3:54 PM

  Authors

  • Sumit Kewalramani

    • Northwestern University

  • CheukYui Leung

    • Northwestern University

  • Jos Zwanikken

    • Northwestern University

  • Robert Macfarlane

    • Northwestern University

  • Monica Olvera de la Cruz

    • Northwestern University
    • Department of Materials Science, Northwestern University, Evanston, IL 60208, USA
    • Department of Materials Science and Engineering, Northwestern University
    • Materials Science and Engineering, Northwestern University

  • Chad Mirkin

    • Northwestern University

  • Michael Bedzyk

    • Northwestern University

  View abstract →

• Ion Competition in Ordered DNA arrays in the Attractive Regime

  ORAL

  March 20, 2013, 3:54 PM – March 20, 2013, 4:06 PM

  Authors

  • Xiangyun Qiu

    • George Washington University
    • Physics department, George Washington University

  • John Giannini

    • Gettysburg College

  • Kurt Andresen

    • Gettysburg College

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• Modeling spatial correlation of DNA deformations: Allosteric effects of DNA protein binding

  ORAL

  March 20, 2013, 4:06 PM – March 20, 2013, 4:18 PM

  Authors

  • Xinliang Xu

    • Department of Chemistry, MIT

  • Jianshu Cao

    • Department of Chemistry, MIT

  View abstract →

• Molecular dynamics simulation of DNA base-pair opening by sharp bending

  ORAL

  March 20, 2013, 4:18 PM – March 20, 2013, 4:30 PM

  Authors

  • Peiwen Cong

    • Singapore-MIT Alliance, National University of Singapore

  • Liang Dai

    • Singapore-MIT Alliance for Research and Technology, National University of Singapore

  • Johan R.C. van der Maarel

    • Physics, National University of Singapore

  • Jie Yan

    • Physics, National University of Singapore

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• Looping of anisotropic, short double-stranded DNA

  ORAL

  March 20, 2013, 4:30 PM – March 20, 2013, 4:42 PM

  Authors

  • Harold Kim

    • Georgia Institute of Technology

  • Tung Le

    • Georgia Institute of Technology

  View abstract →

• DNA looping by a ligase under nanoconfinement

  ORAL

  March 20, 2013, 4:42 PM – March 20, 2013, 4:54 PM

  Authors

  • Maedeh Heidarpour-Roushan

    • North Carolina State University

  • Robert Riehn

    • North Carolina State University

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• Loops determine the mechanical properties of mitotic chromosomes

  ORAL

  March 20, 2013, 4:54 PM – March 20, 2013, 5:06 PM

  Authors

  • Yang Zhang

    • Institute for Theoretical Physics, Heidelberg University, Germany

  • Dieter Heermann

    • Institute for Theoretical Physics, Heidelberg University, Germany
    • University of Heidelberg

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• New insights into nucleosome unwrapping

  ORAL

  March 20, 2013, 5:06 PM – March 20, 2013, 5:18 PM

  Authors

  • Razvan Chereji

    • Rutgers University

  • Alexandre V. Morozov

    • Rutgers University

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• Mechanisms for enhanced protein dissociation driven by nucleosomes

  ORAL

  March 20, 2013, 5:18 PM – March 20, 2013, 5:30 PM

  Authors

  • Ralf Bundschuh

    • The Ohio State University

  • Cai Chen

    • The Ohio State University

  View abstract →