Biological Networks

Presentations

• Network complexity: when interaction strengths matter more than topology

  ORAL

  March 19, 2013, 2:30 PM – March 19, 2013, 2:42 PM

  Authors

  • Mikhail Tikhonov

    • Joseph Henry Laboratories of Physics, Princeton University

  • William Bialek

    • Princeton University
    • Joseph Henry Laboratories of Physics, Lewis-Sigler Institute for Integrative Genomics, Princeton University
    • Joseph Henry Laboratories of Physics, Lewis-Sigler Institute for Integrative Genomics

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• Ising models of strongly coupled biological networks with multivariate interactions

  ORAL

  March 19, 2013, 2:42 PM – March 19, 2013, 2:54 PM

  Authors

  • Lina Merchan

    • Department of Physics, Emory University, Atlanta, GA 30322, USA

  • Ilya Nemenman

    • Department of Physics and Department of Biology, Emory University, Atlanta, Georgia, USA
    • Dept. of Physics \& Dept. Of Biology, Emory University
    • Emory University
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University, Atlanta, GA 30322, USA
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University
    • Departments of Physics and Biology and Computational and Life Sciences Initiative, Emory University

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• Add HOC?: dendritic nonlinearities shape higher-than-pairwise correlations and improve coding in noisy (spiking) neural populations

  ORAL

  March 19, 2013, 2:54 PM – March 19, 2013, 3:06 PM

  Authors

  • Joel Zylberberg

    • University of Washington

  • Eric Shea-Brown

    • University of Washington

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• Automated adaptive model inference to predict biological network dynamics

  ORAL

  March 19, 2013, 3:06 PM – March 19, 2013, 3:18 PM

  Authors

  • Bryan Daniels

    • University of Wisconsin-Madison

  • Ilya Nemenman

    • Department of Physics and Department of Biology, Emory University, Atlanta, Georgia, USA
    • Dept. of Physics \& Dept. Of Biology, Emory University
    • Emory University
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University, Atlanta, GA 30322, USA
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University
    • Departments of Physics and Biology and Computational and Life Sciences Initiative, Emory University

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• Using dynamics to identify network topology

  ORAL

  March 19, 2013, 3:18 PM – March 19, 2013, 3:30 PM

  Authors

  • Sahand Jamal Rahi

    • The Rockefeller University

  • Krasimira Tsaneva-Atanasova

    • University of Bristol

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• Characterization of genotype-phenotype mapping of biological networks reconciles robustness-evolvability paradox

  ORAL

  March 19, 2013, 3:30 PM – March 19, 2013, 3:42 PM

  Authors

  • Chenghang Du

    • Department of Physics, The George Washington University

  • Hao Chen

    • Department of Physics, George Washington University
    • Department of Physics, The George Washington University

  • Chen Zeng

    • Department of Physics, The George Washington University

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• Robustness of Network Measures to Link Errors

  ORAL

  March 19, 2013, 3:42 PM – March 19, 2013, 3:54 PM

  Authors

  • John Platig

    • University of Maryland, College Park

  • Michelle Girvan

    • University of Maryland, College Park
    • Department of Physics, University of Maryland, College Park

  • Edward Ott

    • University of Maryland, College Park
    • Department of Physics, University of Maryland, College Park

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• Cascade-likeness is an intrinsic property of biological processes

  ORAL

  March 19, 2013, 3:54 PM – March 19, 2013, 4:06 PM

  Authors

  • Hao Chen

    • Department of Physics, George Washington University
    • Department of Physics, The George Washington University

  • Guanyu Wang

    • Department of Physics, George Washington University

  • Chenghang Du

    • Department of Physics, George Washington University

  • Rahul Simha

    • Department of Computer Science, George Washington University

  • Chen Zeng

    • Department of Physics, George Washington University

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• Autonomous Boolean Models of Regulatory Networks

  ORAL

  March 19, 2013, 4:06 PM – March 19, 2013, 4:18 PM

  Authors

  • Mengyang Sun

    • Duke physics

  • Xianrui Cheng

    • Duke physics

  • Joshua Socolar

    • Physics Department, Duke University, Durham, NC
    • Duke physics

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• Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming gene

  ORAL

  March 19, 2013, 4:18 PM – March 19, 2013, 4:30 PM

  Authors

  • Alex Lang

    • Boston University

  • Hu Li

    • Boston University

  • James Collins

    • Boston University

  • Pankaj Mehta

    • Boston University
    • Department of Physics, Boston University

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• Phage-bacteria infection networks: From nestedness to modularity

  ORAL

  March 19, 2013, 4:30 PM – March 19, 2013, 4:42 PM

  Authors

  • Cesar O. Flores

    • Georgia Institute of Techonology

  • Sergi Valverde

    • University Pompeu Fabra

  • Joshua S. Weitz

    • Georgia Institute of Technology
    • Georgia Institute of Techonology

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• Continuum neural dynamics models for visual object identification

  ORAL

  March 19, 2013, 4:42 PM – March 19, 2013, 4:54 PM

  Authors

  • Vijay Singh

    • Dept. of Physics, Emory University

  • Martin Tchernookov

    • Dept. of Physics, Emory University

  • Ilya Nemenman

    • Department of Physics and Department of Biology, Emory University, Atlanta, Georgia, USA
    • Dept. of Physics \& Dept. Of Biology, Emory University
    • Emory University
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University, Atlanta, GA 30322, USA
    • Departments of Physics and Biology, Computational and Life Sciences Initiative, Emory University
    • Departments of Physics and Biology and Computational and Life Sciences Initiative, Emory University

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• The parameter landscape of a mammalian circadian clock model

  ORAL

  March 19, 2013, 4:54 PM – March 19, 2013, 5:06 PM

  Authors

  • Craig Jolley

    • RIKEN Center for Dev. Bio., Laboratory for Systems Biology

  • Hiroki Ueda

    • RIKEN Center for Dev. Bio., Laboratory for Systems Biology

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• Effect of Transcranial Magnetic Stimulation on Neuronal Networks

  ORAL

  March 19, 2013, 5:06 PM – March 19, 2013, 5:18 PM

  Authors

  • Ahmet Unsal

    • Iowa State University

  • Ravi Hadimani

    • Iowa Sate University
    • Iowa State University
    • Department of Electrical and Computer engineering, Iowa State University

  • David Jiles

    • Iowa Sate University
    • Department of Electrical and Computer Engineering, Iowa State University
    • 1. Department of Electrical and Computer Engineering, Iowa State University 2. Ames Laboratory, US Department of Energy, Iowa State University
    • Iowa State University
    • Department of Electrical and Computer Engineering, Iowa State University, Ames, Iowa
    • Department of Electrical and Computer engineering, Iowa State University
    • Department of Electrical and Computer engineering, Iowa State University, Iowa, Ames, USA

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• Biochemical response and the effects of bariatric surgeries on type 2 diabetes

  ORAL

  March 19, 2013, 5:18 PM – March 19, 2013, 5:30 PM

  Authors

  • Roland Allen

    • Texas A\&M University

  • Tyler Hughes

    • Texas A\&M University

  • Jia Lerd Ng

    • Texas A\&M University

  • Roberto Ortiz

    • Texas A\&M University

  • Michel Abou Ghantous

    • Texas A\&M University at Qatar

  • Othmane Bouhali

    • Texas A\&M University at Qatar

  • Abdelilah Arredouani

    • Qatar Biomedical Research Institute

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