Focus Session: Single Molecule Biological Physics - Nucleic Acids

Presentations

• From force-fields to photons: MD simulations of dye-labeled nucleic acids and Monte Carlo modeling of FRET

  COFFEE_KLATCH · Invited

  March 1, 2012, 2:30 PM – March 1, 2012, 3:06 PM

  Authors

  • Lori Goldner

    • Physics Department, University of Massachusetts, Amherst

  View abstract →

• Quantifying screening ion excesses surrounding stretched, charged polymers

  ORAL

  March 1, 2012, 3:06 PM – March 1, 2012, 3:18 PM

  Authors

  • Jonathan Landy

    • Materials Dept., UCSB

  • Dustin McIntosh

    • Physics Dept., UCSB

  • Omar Saleh

    • Materials Dept., UCSB

  View abstract →

• Euler buckling and nonlinear kinking of double-stranded DNA

  ORAL

  March 1, 2012, 3:18 PM – March 1, 2012, 3:30 PM

  Authors

  • Alexander Fields

    • Harvard University

  • Kevin Axelrod

    • Harvard University

  • Adam Cohen

    • Harvard University
    • Department of Chemistry and Chemical Biology and Department of Physics, Harvard University

  View abstract →

• Measuring fluctuations in shear stretched DNAs using site specific labeling

  ORAL

  March 1, 2012, 3:30 PM – March 1, 2012, 3:42 PM

  Authors

  • Allen Price

    • Emmanuel College, Boston, MA

  • Thomas Graham

    • Harvard Medical School, Boston, MA

  • Joseph Loparo

    • Harvard Medical School, Boston, MA

  • Joel Eaves

    • University of Colorado, Boulder, CO

  View abstract →

• Electric-field Assisted Deposition of the DNA on Polymer Surface

  ORAL

  March 1, 2012, 3:42 PM – March 1, 2012, 3:54 PM

  Authors

  • JunHwan Ryu

    • Brophy College Preparatory
    • Torah Academy of Bergen County
    • Smithtown High School East
    • Loomis Chaffee School

  • Ke Zhu

    • Stony Brook University

  • Julia Budassi

    • Stony Brook University

  • Jonathan Sokolov

    • Stony Brook University

  View abstract →

• Using Microcontact Printing as a Novel Method for Patterned Dyeing of Surface-adsorbed DNA

  ORAL

  March 1, 2012, 3:54 PM – March 1, 2012, 4:06 PM

  Authors

  • JunHwan Ryu

    • Brophy College Preparatory
    • Torah Academy of Bergen County
    • Smithtown High School East
    • Loomis Chaffee School

  • Julia Budassi

    • Stony Brook University

  • Ke Zhu

    • Stony Brook University

  • Jonathan Sokolov

    • Stony Brook University

  View abstract →

• Stretching DNA Molecules on a Polymer Surface

  ORAL

  March 1, 2012, 4:06 PM – March 1, 2012, 4:18 PM

  Authors

  • JunHwan Ryu

    • Brophy College Preparatory
    • Torah Academy of Bergen County
    • Smithtown High School East
    • Loomis Chaffee School

  • Ke Zhu

    • Stony Brook University

  • Julia Budassi

    • Stony Brook University

  • Jonathan Sokolov

    • Stony Brook University

  View abstract →

• Polarization and Angle Dependence of Fluorescence from Aligned DNA

  ORAL

  March 1, 2012, 4:18 PM – March 1, 2012, 4:30 PM

  Authors

  • JunHwan Ryu

    • Brophy College Preparatory
    • Torah Academy of Bergen County
    • Smithtown High School East
    • Loomis Chaffee School

  • Suri Bandler

    • Ramaz Upper School

  • Ke Zhu

    • Stony Brook University

  • Yingzhan Gu

    • Stony Brook University

  • Julia Budassi

    • Stony Brook University

  • Jonathan Sokolov

    • Stony Brook University

  View abstract →

• Calorimetric and Low-Frequency Dielectric Studies of Mesoscopic Ordering in Solutions of Engineered DNA Hairpin Fragments

  ORAL

  March 1, 2012, 4:30 PM – March 1, 2012, 4:42 PM

  Authors

  • K. Kashuri

    • WPI

  • H. Kashuri

    • WPI

  • G.S. Iannacchione

    • WPI

  View abstract →

• Modeling of DNA zipper reaction rates

  ORAL

  March 1, 2012, 4:42 PM – March 1, 2012, 4:54 PM

  Authors

  • Preston Landon

    • University of California, San Diego
    • Department of Bioengineering and Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, CA 92093, U.S.A.

  • Casey Sanchez

    • University of California, San Diego

  • Alexander Mo

    • University of California, San Diego
    • Department of Bioengineering and Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, CA 92093, U.S.A.

  • Ratnesh Lal

    • University of California, San Diego
    • Department of Bioengineering and Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, CA 92093, U.S.A.

  View abstract →

• Moving Beyond Watson-Crick Models of Coarse Grained DNA

  ORAL

  March 1, 2012, 4:54 PM – March 1, 2012, 5:06 PM

  Authors

  • Kevin Dorfman

    • University of Minnesota - Twin Cities
    • University of Minnesota

  • Margaret Linak

    • University of Minnesota - Twin Cities

  • Richard Tourdot

    • University of Pennsylvania

  View abstract →

• Direct comparison of the theory of molecular solvation with molecular dynamics and experiment

  ORAL

  March 1, 2012, 5:06 PM – March 1, 2012, 5:18 PM

  Authors

  • Tyler Luchko

    • BioMaPS Institute, Rutgers University

  • In Suk Joung

    • BioMaPS Institute, Rutgers University

  • George Giambasu

    • BioMaPS Institute, Rutgers University

  • Darrin York

    • BioMaPS Institute and Chemistry \& Chemical Biology, Rutgers University

  • David A. Case

    • BioMaPS Institute and Chemistry \& Chemical Biology, Rutgers University

  View abstract →

• Information-based measure of chirality for biomolecules

  ORAL

  March 1, 2012, 5:18 PM – March 1, 2012, 5:30 PM

  Authors

  • Karol Baca Lopez

    • Faculty of Sciences, Autonomous University of the State of Mexico

  • B. Roy Frieden

    • College of Optical Sciences, The University of Arizona

  • Roberto Lopez

    • Faculty of Sciences, Autonomous University of the State of Mexico

  • Miguel Mayorga

    • Faculty of Sciences, Autonomous University of the State of Mexico

  • Enrique Henandez Lemus

    • Computational Genomics Department, National Institute of Genomic Medicine

  View abstract →