Biological Networks and Systems Biology

Presentations

• Computer Simulations of Loss of Organization of Neurons as a Model for Age-related Cognitive Decline

  ORAL

  March 24, 2011, 2:30 PM – March 24, 2011, 2:42 PM

  Authors

  • Luis Cruz Cruz

    • Physics Dept., 3141 Chestnut St., Drexel University, Philadelphia PA 19104
    • Drexel University

  • Elene Fengometidis

    • Physics Dept., 3141 Chestnut St., Drexel University, Philadelphia PA 19104

  • Frank Jones

    • Physics Dept., 3141 Chestnut St., Drexel University, Philadelphia PA 19104

  • Srinivas Jampani

    • Physics Dept., 3141 Chestnut St., Drexel University, Philadelphia PA 19104

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• Coupled feedback loops govern bistability properties in gene networks

  ORAL

  March 24, 2011, 2:42 PM – March 24, 2011, 2:54 PM

  Authors

  • Abhinav Tiwari

    • Rice University

  • Oleg Igoshin

    • Rice University

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• Better Bet-Hedging with coupled positive and negative feedback loops

  ORAL

  March 24, 2011, 2:54 PM – March 24, 2011, 3:06 PM

  Authors

  • Jatin Narula

    • Dept. of Bioengineering, Rice University

  • Oleg Igoshin

    • Dept. of Bioengineering, Rice University

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• Attractor Distribution in Random Biological Networks Described by ODEs and Diminished Order-Chaos Transition

  ORAL

  March 24, 2011, 3:06 PM – March 24, 2011, 3:18 PM

  Authors

  • Zhiyuan Li

    • UCSF, Dept of Biophysics

  • Chao Tang

    • UCSF

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• Beyond Critical Exponents in Neuronal Avalanches

  ORAL

  March 24, 2011, 3:18 PM – March 24, 2011, 3:30 PM

  Authors

  • Nir Friedman

    • Department of Physics, University of Illinois at Urbana-Champaign

  • Tom Butler

    • Massachusetts Institute of Technology

  • Robert DeVille

    • Department of Mathematics, University of Illinois at Urbana-Champaign

  • John Beggs

    • University of Indiana

  • Karin Dahmen

    • University of Illinois at Urbana Champaign
    • Department of Physics, University of Illinois at Urbana-Champaign
    • University of Illinois at Urbana-Champaign

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• Stochastic Modeling of Regulation of Gene Expression by Multiple Competing Small RNAs

  ORAL

  March 24, 2011, 3:30 PM – March 24, 2011, 3:42 PM

  Authors

  • Charles Baker

    • Virginia Polytechnic Institute and State University

  • Tao Jia

    • Virginia Polytechnic Institute and State University
    • Department of Physics, Virginia Polytechnic Institute and State University

  • Rahul V. Kulkarni

    • Virginia Polytechnic Institute and State University
    • Department of Physics, Virginia Polytechnic Institute and State University

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• The up and down states of cortical networks

  ORAL

  March 24, 2011, 3:42 PM – March 24, 2011, 3:54 PM

  Authors

  • Maryam Ghorbani

    • UCLA

  • Alex Levine

    • UCLA, Department of Chemistry \& Biochemistry
    • UCLA
    • University of California, Los Angeles

  • Mayank Mehta

    • UCLA

  • Robijn Bruinsma

    • UCLA

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• Adiabatic and Non-Adiabatic Non-Equilibrium Stochastic Dynamics of Single Regulating Genes

  ORAL

  March 24, 2011, 3:54 PM – March 24, 2011, 4:06 PM

  Authors

  • Haidong Feng

    • Department of Chemistry, State University of New York at Stony Brook

  • Bo Han

    • Department of Chemistry, State University of New York at Stony Brook

  • Jin Wang

    • Department of Chemistry, State University of New York at Stony Brook

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• Steady state growth of \textit{E. Coli} in low ammonium environment

  ORAL

  March 24, 2011, 4:06 PM – March 24, 2011, 4:18 PM

  Authors

  • Minsu Kim

    • UCSD

  • Barret Deris

    • UCSD

  • Zhongge Zhang

    • UCSD

  • Terry Hwa

    • UCSD

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• Threshold response and bimodality in non-cooperative auto-activation circuits

  ORAL

  March 24, 2011, 4:18 PM – March 24, 2011, 4:30 PM

  Authors

  • Rutger Hermsen

    • Center for Theoretical Biological Physics, UC San Diego
    • Center for Theoretical Biological Physics, University of California, San Diego, CA, USA

  • David Erickson

    • Center for Theoretical Biological Physics, UC San Diego

  • Terence Hwa

    • Center for Theoretical Biological Physics, UC San Diego

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• Inferring Complex Network Topology from Spatio-Temporal Spike Patterns

  ORAL

  March 24, 2011, 4:30 PM – March 24, 2011, 4:42 PM

  Authors

  • Frank Van Bussel

    • Max Planck Institute for Dynamics and Self-Organization, Goettingen, Germany

  • Birgit Kriener

    • Max Planck Institute for Dynamics and Self-Organization, Goettingen, Germany

  • Marc Timme

    • Max Planck Institute for Dynamics and Self-Organization, Goettingen, Germany

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• ABSTRACT WITHDRAWN

  March 24, 2011, 4:42 PM – March 24, 2011, 4:54 PM

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• Temporal competition between differentiation programs determines cell fate choice

  ORAL

  March 24, 2011, 4:54 PM – March 24, 2011, 5:06 PM

  Authors

  • Anna Kuchina

    • UT Southwestern Medical Center

  • Lorena Espinar

    • Universitat Polit\`ecnica de Catalunya

  • Tolga Cagatay

    • UT Southwestern Medical Center

  • Alejandro Balbin

    • UT Southwestern Medical Center

  • Alma Alvarado

    • UT Southwestern Medical Center

  • Jordi Garcia-Ojalvo

    • Universitat Polit\`ecnica de Catalunya

  • G\"{u}rol S\"{u}el

    • UT Southwestern Medical Center

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• Comparison of Control Approaches in Genetic Regulatory Networks by Using Stochastic Master Equation Models, Probabilistic Boolean Network Models and Differential Equation Models and Estimated Error Analyzes

  ORAL

  March 24, 2011, 5:06 PM – March 24, 2011, 5:18 PM

  Authors

  • Mehmet Umut Caglar

    • Texas Tech University

  • Ranadip Pal

    • Texas Tech University

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