Computational Molecular Biophysics

Presentations

• Simulation of pH-dependent Behavior of Liposome

  ORAL

  March 23, 2011, 2:30 PM – March 23, 2011, 2:42 PM

  Authors

  • Rejwan Ali

    • Fordham University \& Queensborough Community College of CUNY

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• \textit{In silico} investigation of molecular effects caused by missense mutations in creatine transporter protein

  ORAL

  March 23, 2011, 2:42 PM – March 23, 2011, 2:54 PM

  Authors

  • Zhe Zhang

    • Clemson University

  • Charles Schwatz

    • Greenwood Genetic Center

  • Emil Alexov

    • Clemson University

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• Investigating the mechanism of DNA bulk hybridization with Forward Flux Sampling

  ORAL

  March 23, 2011, 2:54 PM – March 23, 2011, 3:06 PM

  Authors

  • Daniel Hinckley

    • Department of Chemical and Biological Engineering, University of Wisconsin-Madison

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• A backbone based protein model with explicit solvent

  ORAL

  March 23, 2011, 3:06 PM – March 23, 2011, 3:18 PM

  Authors

  • Sumit Sharma

    • Princeton University

  • Sergey Buldyrev

    • Yeshiva University

  • Peter Rossky

    • University of Texas at Austin
    • University of Texas Austin

  • H. Eugene Stanley

    • Boston University

  • Pablo G. Debenedetti

    • Princeton University

  • C. Austen Angell

    • Arizona State University

  • Sanat Kumar

    • Columbia University

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• Connecting ion channel simulations to experiment

  ORAL

  March 23, 2011, 3:18 PM – March 23, 2011, 3:30 PM

  Authors

  • Peter Hugo Nelson

    • Benedictine University

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• On the Minimum Energy Path to Membrane Pore Formation

  ORAL

  March 23, 2011, 3:30 PM – March 23, 2011, 3:42 PM

  Authors

  • Christina Ting

    • California Institute of Technology

  • Zhen-Gang Wang

    • California Institute of Technology

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• Capturing electrostatic interactions explicitly with the 3SPN model for DNA

  ORAL

  March 23, 2011, 3:42 PM – March 23, 2011, 3:54 PM

  Authors

  • Gordon S. Freeman

    • Department of Chemical and Biological Engineering, University of Wisconsin-Madison

  • Daniel Hinckley

    • Department of Chemical and Biological Engineering, University of Wisconsin-Madison

  • Juan J. de Pablo

    • Department of Chemical and Biological Engineering, University of Wisconsin-Madison

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• Intrinsic noise in stochastic models of gene expression with molecular memory and bursting

  ORAL

  March 23, 2011, 3:54 PM – March 23, 2011, 4:06 PM

  Authors

  • Tao Jia

    • Virginia Polytechnic Institute and State University
    • Department of Physics, Virginia Polytechnic Institute and State University

  • Rahul V. Kulkarni

    • Virginia Polytechnic Institute and State University
    • Department of Physics, Virginia Polytechnic Institute and State University

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• First-Principles Study of Muon Trapping in Singlet and Triplet States of Oxyhemoglobin

  ORAL

  March 23, 2011, 4:06 PM – March 23, 2011, 4:18 PM

  Authors

  • S.R. Badu

    • Department of Physics and Astronomy, University of Utah

  • Achana Dubey

    • Department of Physics, UCF

  • Lee Chow

    • Physics Department, UCF

  • R.H. Pink

    • Physics Department, SUNY Albany

  • R.H. Scheicher

    • Department of Physics and Astronomy, Uppsala University

  • K. Nagamine

    • Physics Department, UCR

  • N. Sahoo

    • UTMD Anderson

  • T.P. Das

    • Department of Physics, SUNY Albany

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• Binding-rebinding dynamics of proteins interacting non-specifically with a long DNA molecule

  ORAL

  March 23, 2011, 4:18 PM – March 23, 2011, 4:30 PM

  Authors

  • Azita Parsaeian

    • Department of Materials Science and Engineering, Northwestern University

  • John F. Marko

    • Northwestern University
    • D

  • Monica Olvera de la Cruz

    • Northwestern University
    • Department of Materials Science and Engineering, Northwestern University

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• Regulation of gene expression by small RNAs via coupled stoichiometric degradation: a variational approach

  ORAL

  March 23, 2011, 4:30 PM – March 23, 2011, 4:42 PM

  Authors

  • Rahul V. Kulkarni

    • Department of Physics, Virginia Tech

  • Thierry Platini

    • Virginia Bioinformatics Institute

  • Tao Jia

    • Department of Physics, Virginia Tech

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• Spatial gradients of Ran-GTP-importin-$\beta$ complex around chromosomes in a cell of spheroidal shape

  ORAL

  March 23, 2011, 4:42 PM – March 23, 2011, 4:54 PM

  Authors

  • Guillermo Ramirez-Santiago

    • Instituto de Fisica, UNAM, Mexico

  • Gerardo Sosa

    • Instituto de Fisica, UNAM, Mexico

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• Kinetic simulations of tension-induced DNA strand-unpeeling transition

  ORAL

  March 23, 2011, 4:54 PM – March 23, 2011, 5:06 PM

  Authors

  • Yuanyuan Qu

    • Department of Physics, National University of Singapore

  • Hongxia Fu

    • Mechanobiology Institute, Singapore, National University of Singapore
    • Mechanobiology Institute, Singapre, National University of Singapore

  • Jie Yan

    • Mechanobiology Institute, Singapore, National University of Singapore; Department of Physics, National University of Singapore
    • Mechanobiology Institute, Singapore, Department of Physcis, National University of Singapore
    • National University of Singapore

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• Determination of NMR chemical shifts for cholesterol crystals from first-principles

  ORAL

  March 23, 2011, 5:06 PM – March 23, 2011, 5:18 PM

  Authors

  • Emine Kucukbenli

    • International School for Advanced Studies (SISSA) and CNR-IOM DEMOCRITOS Simulation Center, via Bonomea 265, 34136 Trieste, Italy

  • Stefano de Gironcoli

    • International School for Advanced Studies (SISSA) and CNR-IOM DEMOCRITOS Simulation Center, via Bonomea 265, 34136 Trieste, Italy
    • International School for Advanced Studies (SISSA), via Bonomea 265 Trieste Italy
    • SISSA and CNR-IOM DEMOCRITOS,Trieste, Italy

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