Nucleic Acids: Packaging, Ejection and Translocation

Presentations

• Anomalous scaling of nano-pore translocation times of structured biomolecules

  ORAL

  March 16, 2009, 2:30 PM – March 16, 2009, 2:42 PM

  Authors

  • Malcolm McCauley

    • Department of Physics, Ohio State University

  • Robert Forties

    • The Ohio State University
    • Department of Physics, Ohio State University

  • Ulrich Gerland

    • Arnold Sommerfeld Center for Theoretical Physics, University of Munich (LMU)

  • Ralf Bundschuh

    • The Ohio State University
    • Department of Physics, Ohio State University

  View abstract →

• DNA Physical Mapping via the Controlled Translocation of Single Molecules through a 5-10nm Silicon Nitride Nanopore

  ORAL

  March 16, 2009, 2:42 PM – March 16, 2009, 2:54 PM

  Authors

  • Derek Stein

    • Brown University

  • Walter Reisner

    • Brown University

  • Zhijun Jiang

    • Brown University

  • Nick Hagerty

    • Brown University

  • Charles Wood

    • Brown University

  • Jason Chan

    • Brown University

  View abstract →

• The Effects of Bio-functionalization on Solid-state Nanopore Transport -- Theory and Experiments on DNA

  ORAL

  March 16, 2009, 2:54 PM – March 16, 2009, 3:06 PM

  Authors

  • Yaling Liu

    • Department of Mechanical and Aerospace Engineering

  • Abhijit Ramachandran

    • Department of Mechanical and Aerospace Engineering

  • Samir M. Iqbal

    • Department of Electrical Engineering, NanoFAB Center, University of Texas at Arlington

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• Nanopores as a Single-Molecule Probe for Protein-DNA Complexes

  ORAL

  March 16, 2009, 3:06 PM – March 16, 2009, 3:18 PM

  Authors

  • A.R. Hall

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • S.W. Kowalczyk

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • R.M.M. Smeets

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • N.H. Dekker

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • C. Dekker

    • Kavli Institute of Nanoscience, Delft Institute of Technology

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• Computational model of controlled translocation of DNA molecule through a nanopore membrane with tunable electrostatic potential

  ORAL

  March 16, 2009, 3:18 PM – March 16, 2009, 3:30 PM

  Authors

  • Alexey Nikolaev

    • Clarkson University

  • Maria Gracheva

    • Clarkson University

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• Heterogeneity in Retroviral Nucleocapsid Protein Function

  ORAL

  March 16, 2009, 3:30 PM – March 16, 2009, 3:42 PM

  Authors

  • Christy Landes

    • University of Houston

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• Energetics of genome ejection from phage revealed by isothermal titration calorimetry

  ORAL

  March 16, 2009, 3:42 PM – March 16, 2009, 3:54 PM

  Authors

  • Meerim Jeembaeva

  • Bengt Jonsson

  • Martin Castelnovo

  • Alex Evilevitch

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• Inhibition of DNA ejection from bacteriophage by Mg$^{+2}$ counterions

  ORAL

  March 16, 2009, 3:54 PM – March 16, 2009, 4:06 PM

  Authors

  • Seil Lee

    • School of Physics, Georgia Institute of Technology

  • Cathy V. Tran

    • School of Chemistry and Biochemistry, Georgia Institute of Technology

  • Toan T. Nguyen

    • School of Physics, Georgia Institute of Technology

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• Osmotic pressure: resisting or promoting DNA ejection from phage? Internal capsid-pressure dependence of viral infection

  ORAL

  March 16, 2009, 4:06 PM – March 16, 2009, 4:18 PM

  Authors

  • Alex Evilevitch

    • Lund University
    • Department of Biochemistry, Lund University, Sweden

  • Meerim Jeembaeva

    • Department of Biochemistry, Lund University, Sweden

  • Sarah Koester

    • Department of Physics, Harvard University, Cambridge, MA

  • Martin Castelnovo

    • Laboratoire de Physique, Ecole Normale Superieure de Lyon, France

  • David Weitz

    • Harvard University
    • SEAS, Harvard
    • Department of Physics, School of Engineering and Applied Sciences, Harvard University
    • Department of Physics, Harvard University, Cambridge, MA
    • Harvard

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• Charting the Structure and Energetics of Packaged DNA in Bacteriophages

  ORAL

  March 16, 2009, 4:18 PM – March 16, 2009, 4:30 PM

  Authors

  • Xiangyun Qiu

    • National Institutes of Health

  • Donald C. Rau

    • National Institutes of Health

  • V. Adrian Parsegian

    • National Institutes of Health

  • Li Tai Fang

    • University of California, Los Angeles

  • Charles M. Knobler

    • University of California, Los Angeles

  • William M. Gelbart

    • University of California, Los Angeles

  View abstract →

• Stabilising the Herpes Simplex Virus capsid by DNA packaging

  ORAL

  March 16, 2009, 4:30 PM – March 16, 2009, 4:42 PM

  Authors

  • Gijs Wuite

    • Natuur- en Sterrenkunde, Vrije Universiteit, Amsterdam
    • VU University, Amsterdam

  • Kerstin Radtke

  • Beate Sodeik

    • Medizinische Hochschule Hannover, Germany

  • Wouter Roos

    • VU University, Amsterdam

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• Effect of ions on polymer ejection dynamics from viral capsids

  ORAL

  March 16, 2009, 4:42 PM – March 16, 2009, 4:54 PM

  Authors

  • Issam Ali

    • Department of Physics, College of Science, PO Box 36, Sultan Qaboos University, Al Khod 123, Oman

  • Davide Marenduzzo

    • SUPA, School of Physics, University of Edinburgh, Mayfield Road, Edinburgh, EH9 3JZ, UK

  • Julia Yeomans

    • Rudolph Pieirls Centre for Theoretical Physics, 1 Keble Road, Oxford, OX1 3NP, UK

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• Investigating Nanopore Spatial Resolution Using Locally Coated RecA-dsDNA Filaments

  ORAL

  March 16, 2009, 4:54 PM – March 16, 2009, 5:06 PM

  Authors

  • A.R. Hall

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • S.W. Kowalczyk

    • Kavli Institute of Nanoscience, Delft Institute of Technology

  • C. Dekker

    • Kavli Institute of Nanoscience, Delft Institute of Technology

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• Electrically Gated Solid State Nanopores

  ORAL

  March 16, 2009, 5:06 PM – March 16, 2009, 5:18 PM

  Authors

  • Zhijun Jiang

    • Brown University

  • Walter Reisner

    • Brown University

  • Derek Stein

    • Brown University

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• Structural transitions in packing of a semi-flexible chain confined in a sphere

  ORAL

  March 16, 2009, 5:18 PM – March 16, 2009, 5:30 PM

  Authors

  • Artem Levandovsky

    • University of California, Riverside
    • University of California Riverside

  • Leonid Pryadko

    • UCR
    • University of California, Riverside
    • Department of Physics, University of California at Riverside

  • Roya Zandi

    • University of California, Riverside
    • Department of Physics, University of California at Riverside

  View abstract →