Biomolecular Computation

Presentations

• Hydrophobic polymers in nano-sized water droplets

  ORAL

  March 13, 2008, 7:00 AM – March 13, 2008, 7:12 AM

  Authors

  • Buddhi Tilakaratne

    • University of Houston

  • Samina Masood

    • University of Houston, Clear Lake

  • Margaret Cheung

    • University of Houston

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• A classical density functional for water

  ORAL

  March 13, 2008, 7:12 AM – March 13, 2008, 7:24 AM

  Authors

  • David Roundy

    • Oregon State University

  • Dennis Jackson

    • Oregon State University

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• Hydrophobic interactions at molecular scale.

  ORAL

  March 13, 2008, 7:24 AM – March 13, 2008, 7:36 AM

  Authors

  • Dubravko Sabo

    • Sandia National Laboratories

  • Sameer Varma

    • Sandia National Laboratories

  • Susan Rempe

    • Sandia National Laboratories

  • Marcus Martin

    • Sandia National Laboratories

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• Computing absolute binding affinities via non-equilibrium unbinding simulations

  ORAL

  March 13, 2008, 7:36 AM – March 13, 2008, 7:48 AM

  Authors

  • F. Marty Ytreberg

    • University of Idaho

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• Macromolecular crowding effects on Brownian motion of protein GB1

  ORAL

  March 13, 2008, 7:48 AM – March 13, 2008, 8:00 AM

  Authors

  • Antonios Samiotakis

    • University of Houston

  • Margaret Cheung

    • University of Houston

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• Core-Shell Model of Folding-Unfolding Transitions (UFT) in Proteins

  ORAL

  March 13, 2008, 8:00 AM – March 13, 2008, 8:12 AM

  Authors

  • Svetlana Aroutiounian

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• Potential of mean force of Glycophorin A alpha-helix dimerization

  ORAL

  March 13, 2008, 8:12 AM – March 13, 2008, 8:24 AM

  Authors

  • Lorant Janosi

    • University of Houston

  • Manolis Doxastakis

    • University of Houston

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• Monte Carlo Simulations with reference interaction site model theory for simulating peptide molecules in aqueous solution

  ORAL

  March 13, 2008, 8:24 AM – March 13, 2008, 8:36 AM

  Authors

  • Ayori Mitsutake

    • Keio Univ.

  • Yutaka Maruyama

    • IMS

  • Takashi Imai

    • Ritsumei Univ.

  • Masahiro Kinoshita

    • Kyoto Univ.

  • Yuko Okamoto

    • Nagoya Univ.

  • Fumio Hirata

    • IMS

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• Glassy protein dynamics and gigantic solvent reorganization energy of plastocyanin

  ORAL

  March 13, 2008, 8:36 AM – March 13, 2008, 8:48 AM

  Authors

  • David LeBard

    • Center for Biological Physics, Arizona State University

  • Dmitry Matyushov

    • Center for Biological Physics, Arizona State University

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• Modeling low frequency vibrational modes of large biomolecules

  ORAL

  March 13, 2008, 8:48 AM – March 13, 2008, 9:00 AM

  Authors

  • Otto Sankey

    • Arizona State University

  • Eric Dykeman

    • Arizona State University

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• Monte Carlo simulations of Protein Adsorption

  ORAL

  March 13, 2008, 9:00 AM – March 13, 2008, 9:12 AM

  Authors

  • Sumit Sharma

    • Columbia University

  • Sanat K. Kumar

    • Columbia University
    • Columbia Univ.

  • Georges Belfort

    • Rensselaer Polytechnic Institute

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• Complexation of Flavonoids with Iron: Structure and Optical Signatures

  ORAL

  March 13, 2008, 9:12 AM – March 13, 2008, 9:24 AM

  Authors

  • Jun Ren

    • Harvard University
    • Physics Department and School of Engineering and Applied Sciences, Harvard University

  • Sheng Meng

    • Physics Department and School of Engineering and Applied Sciences, Harvard University

  • Ch. E. Lekka

    • Department of Materials Science and Engineering, University of Ioannina, Ioannina 45110, Greece

  • Efthimios Kaxiras

    • Physics Department and School of Engineering and Applied Sciences, Harvard University

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• When Cells Collide: A Model for Cell-Assisted Cell Growth based on Direct Contacts

  ORAL

  March 13, 2008, 9:24 AM – March 13, 2008, 9:36 AM

  Authors

  • Carl Franck

    • Cornell University

  • Wui Ip

    • Cornell University

  • Albert Bae

    • Cornell University

  • Nathan Franck

    • Cornell University

  • Elijah Bogart

    • Cornell University

  • Thanhbinh Thi Le

    • Cornell University

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• Do Porins Pass CAPs?

  ORAL

  March 13, 2008, 9:36 AM – March 13, 2008, 9:48 AM

  Authors

  • C.B. Hanna

    • Boise State University

  • D.A. Pink

    • St. Francis Xavier University

  • T.A. Gill

    • Dalhousie University

  • T.J. Beveridge

    • University of Guelph

  • B.E. Quinn

  • J.J. Durrant

    • Boise State University

  • M.H. Jericho

    • Dalhousie University

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• Multimode Analysis of SHG Signal from Complex Biological Systems: Parameterization of Regional and Global Features.

  ORAL

  March 13, 2008, 9:48 AM – March 13, 2008, 10:00 AM

  Authors

  • Clayton Bratton

    • Dept.of Physics, Univ. of California, Davis

  • Karen Reiser

    • Dept.of Neurological Surgery, Univ. of California, Davis

  • Andre Knoesen

    • Dept. of Electrical and Computer Eng., Univ. of California, Davis

  • Diego Yankelevich

    • Dept. of Electrical and Computer Eng., Univ. of California, Davis

  • Mingshi Wang

    • Dept. of Electrical and Computer Eng., Univ. of California, Davis

  • Israel Rocha-Mendosa

    • Cardiff School of Biosciences, Univ. of Cardiff, Wales

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