DNA/RNA in vivo

Presentations

• Designability as a Selection Force? An Analysis of the Yeast Cell Cycle Dynamics.

  ORAL

  March 9, 2007, 9:15 AM – March 9, 2007, 9:27 AM

  Authors

  • Yigal Nochomovitz

    • UCSF

  • Surya Ganguli

    • UCSF

  • Hao Li

    • UCSF

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• Fine tuning by miRNAs in development

  ORAL

  March 9, 2007, 9:27 AM – March 9, 2007, 9:39 AM

  Authors

  • Peter McHale

    • UCSD

  • Erel Levine

    • UCSD

  • Herbert Levine

    • UCSD
    • Center for Theoretical Biological Physics, UCSD
    • Center for Theoretical Biological Physics, UC SanDiego

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• Modeling the dynamics of the nucleosome at various levels.

  ORAL

  March 9, 2007, 9:39 AM – March 9, 2007, 9:51 AM

  Authors

  • Alexey Onufriev

    • Virginia Tech

  • Andrew Fenley

    • Virginia Tech

  • Jory Zmuda-Ruscio

    • Virginia Tech

  • David Adams

    • Virginia Tech

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• How frog embryos replicate their DNA reliably

  ORAL

  March 9, 2007, 9:51 AM – March 9, 2007, 10:03 AM

  Authors

  • John Bechoefer

    • Dept. of Physics, Simon Fraser University
    • Simon Fraser University

  • Brandon Marshall

    • Dept. of Physics, Simon Fraser University

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• Modeling the Forced Extension of Nicked DNA

  ORAL

  March 9, 2007, 10:03 AM – March 9, 2007, 10:15 AM

  Authors

  • Alexander Balaeff

    • Department of Chemistry, Duke University

  • Stephen Craig

    • Department of Chemistry, Duke University

  • David Beratan

    • Department of Chemistry, Duke University

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• Single-Molecule Studies of the Temperature Dependence of Viral DNA Packaging Motors

  ORAL

  March 9, 2007, 10:15 AM – March 9, 2007, 10:27 AM

  Authors

  • Michael White

    • University of California, San Diego

  • Dorian Raymer

    • University of California, San Diego

  • Peter Rickgauer

    • University of California, San Diego

  • Derek Fuller

    • University of California, San Diego

  • Shelley Grimes

    • University of Minnesota, Minneapolis

  • Paul Jardine

    • University of Minnesota, Minneapolis

  • Dwight Anderson

    • University of Minnesota, Minneapolis

  • Douglas Smith

    • University of California, San Diego

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• Identifying Dyads and their conservation in Drosphila.

  ORAL

  March 9, 2007, 10:27 AM – March 9, 2007, 10:39 AM

  Authors

  • Debasis Dan

    • Indiana University, Bloomington

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• Relating Promoter Sequences to the Proteins that Bind to Them: A Comparison Study.

  ORAL

  March 9, 2007, 10:39 AM – March 9, 2007, 10:51 AM

  Authors

  • Kimberly Glass

    • University of Maryland/National Institute of Health

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• Studying Codon Usage: From sequence to function

  ORAL

  March 9, 2007, 10:51 AM – March 9, 2007, 11:03 AM

  Authors

  • Terry Hwa

    • Center for Theoretical Biological Physics, UCSD
    • Center for Theoretical Biological Physics, UC San Diego

  • Stefan Klumpp

    • Center for Theoretical Biological Physics, UCSD
    • Center for Theoretical Biological Physics, UC San Diego

  • Jiajia Dong

    • Dept. of Physics, Virginia Tech
    • Dept. Physics, Virginia Tech

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• A Model of Codon Usage Bias

  ORAL

  March 9, 2007, 11:03 AM – March 9, 2007, 11:15 AM

  Authors

  • Morten Kloster

    • UCSF

  • Chao Tang

    • UCSF

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• Single Molecule Study of Metalloregulatory Protein-DNA Interactions

  ORAL

  March 9, 2007, 11:15 AM – March 9, 2007, 11:27 AM

  Authors

  • Susanta Sarkar

    • Cornell University

  • Jaime Benitez

    • Cornell University

  • Zhengxi Huang

    • Cornell University

  • Qi Wang

    • Cornell University

  • Peng Chen

    • Cornell University

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• A plausible model for the digital response of p53 to DNA damage

  ORAL

  March 9, 2007, 11:27 AM – March 9, 2007, 11:39 AM

  Authors

  • Gustavo Stolovitzky

    • IBM T.J. Watson Research Center, Yorktown Heights, New York
    • IBM T.J. Watson Research Center, Yorktown Heights, New York;

  • Lan Ma

    • The University of Texas Southwestern Medical Center, Dallas, Texas
    • The Univ. of Texas Southwestern Medical Center, Dallas, Texas

  • John Wagner

    • IBM T.J. Watson Research Center, Yorktown Heights, New York

  • J. Jeremy Rice

    • IBM T.J. Watson Research Center, Yorktown Heights, New York

  • Wenwei Hu

    • Cancer Inst of New Jersey, Univ. of Med and Dentistry of NJ, New Brunswick, New Jersey
    • Cancer Inst of New Jersey, Univ. of Med and Dent. NJ, New Brunswick, New Jersey

  • Arnold Levine

    • School of Natural Sciences, Institute for Advanced study, Princeton, New Jersey

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• Transcription factor binding energy vs. biological function

  ORAL

  March 9, 2007, 11:39 AM – March 9, 2007, 11:51 AM

  Authors

  • M. Djordjevic

    • The Ohio State University

  • E. Grotewold

    • The Ohio State University

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• Dynamics of DNA bending/unbending in complex with DNA-bending protein IHF

  ORAL

  March 9, 2007, 11:51 AM – March 9, 2007, 12:03 PM

  Authors

  • Anjum Ansari

    • University of Illinois at Chicago

  • Paula Vivas

    • University of Illinois at Chicago

  • Serguei Kuznetsov

    • University of Illinois at Chicago

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• HMGB binding to DNA: comparisons between single and double box motifs

  ORAL

  March 9, 2007, 12:03 PM – March 9, 2007, 12:15 PM

  Authors

  • Micah J. McCauley

    • Department of Physics, Northeastern University

  • Jeff Zimmerman

    • Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine

  • L. James Maher III

    • Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine

  • Mark C. Williams

    • Department of Physics, Northeastern University
    • Department of Physics, Northeastern University, Boston, USA.

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