Focus Session: Nucleic Acid Protein Interaction

Presentations

• Accuracy of Localization Methods for Individual Fluorescent Probes

  COFFEE_KLATCH · Invited

  March 9, 2007, 6:00 AM – March 9, 2007, 6:36 AM

  Authors

  • Henrik Flyvbjerg

    • Biosystems Department and Danish Polymer Centre, Ris{\o} National Laboratory, Technical University of Denmark

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• Phenotypic consequences of promoter-mediated transcriptional noise: Experiment and computational modeling

  ORAL

  March 9, 2007, 6:36 AM – March 9, 2007, 6:48 AM

  Authors

  • Gabor Balazsi

    • Center for BioDynamics and Center for Advanced Biotechnology, Boston University, Boston, MA 02215, USA
    • University of Texas M. D. Anderson Cancer Center

  • William Blake

    • Center for BioDynamics and Center for Advanced Biotechnology, Boston University, Boston, MA 02215, USA

  • Michael Kohanski

    • Center for BioDynamics and Center for Advanced Biotechnology, Boston University, Boston, MA 02215, USA

  • Kevin Murphy

    • Center for BioDynamics and Center for Advanced Biotechnology, Boston University, Boston, MA 02215, USA

  • James Collins

    • Center for BioDynamics and Center for Advanced Biotechnology, Boston University, Boston, MA 02215, USA

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• Role of boundary constrains in DNA looping problem.

  ORAL

  March 9, 2007, 6:48 AM – March 9, 2007, 7:00 AM

  Authors

  • Alexei Tkachenko

    • University of Michigan

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• Kinetic Accessibility of Buried DNA Sites in Nucleosomes

  ORAL

  March 9, 2007, 7:00 AM – March 9, 2007, 7:12 AM

  Authors

  • Wolfram M\"obius

    • Arnold Sommerfeld Center for Theoretical Physics (ASC) and Center for Nanoscience (CeNS), LMU Munich

  • Richard A. Neher

    • Arnold Sommerfeld Center for Theoretical Physics (ASC) and Center for Nanoscience (CeNS), LMU Munich

  • Ulrich Gerland

    • Institute for Theoretical Physics, University of Cologne

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• Coarse-Grained Modeling of Molecular Machines in AAA+ Family

  ORAL

  March 9, 2007, 7:12 AM – March 9, 2007, 7:24 AM

  Authors

  • Kenji Yoshimoto

    • Department of Molecular Biology, The Scripps Research Institute

  • Charles L. Brooks III

    • Department of Molecular Biology, The Scripps Research Institute

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• A Simple Model of Nucleosome Localization

  ORAL

  March 9, 2007, 7:24 AM – March 9, 2007, 7:36 AM

  Authors

  • David Schwab

    • UCLA

  • Robijn Bruinsma

    • UCLA
    • University of California, Los Angeles
    • Department of Physics and Astronomy, University of California at Los Angeles

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• Dynamics of assembly of proteins along a stretched DNA

  ORAL

  March 9, 2007, 7:36 AM – March 9, 2007, 7:48 AM

  Authors

  • Ranjith Padinhateeri

    • Department of Physics, University of Illinois at Chicago, IL 60607

  • John Marko

    • Department of Physics and Astronomy, and Department of Biochemisty, Molecular Biology and Cell Biology, Northwestern University, Evanston, IL 60208

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• Hidden Markov Analysis of Tethered Particle Motion

  ORAL

  March 9, 2007, 7:48 AM – March 9, 2007, 8:00 AM

  Authors

  • Phil Nelson

    • Univ Penn

  • John Beausang

    • Univ Penn

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• Model for the simultaneous evolution of protein sequences and conformations

  ORAL

  March 9, 2007, 8:00 AM – March 9, 2007, 8:12 AM

  Authors

  • Longhua Hu

    • Department of Physics, University of Minnesota

  • Alexander Grosberg

    • Department of Physics, University of Minnesota

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• Unwinding of double-stranded DNA and branch migration of Holliday junctions by hexameric motor proteins

  ORAL

  March 9, 2007, 8:12 AM – March 9, 2007, 8:24 AM

  Authors

  • Noah Ribeck

    • Physics Department, University of California Santa Barbara

  • Omar A. Saleh

    • Materials Department and BMSE Program, University of California Santa Barbara
    • Materials Dept. and BMSE Program, UCSB

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• How cells decide between life and death: predictions from stochastic simulation

  ORAL

  March 9, 2007, 8:24 AM – March 9, 2007, 8:36 AM

  Authors

  • Subhadip Raychaudhuri

    • University of California Davis

  • Eric Willgohs

    • University of California Davis

  • Thuc-Nghi Nguyen

    • University of California Davis

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• Evolution of codes, crosstalk, and sequence niches in biomolecular signaling

  ORAL

  March 9, 2007, 8:36 AM – March 9, 2007, 8:48 AM

  Authors

  • Christopher Myers

    • Cornell University
    • Cornell Theory Center, Cornell University

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• Transcriptional Interference: A quantitative approach to in vivo dynamics of RNAP on DNA.

  ORAL

  March 9, 2007, 8:48 AM – March 9, 2007, 9:00 AM

  Authors

  • Kim Sneppen

    • Niels Bohr Institute
    • Niels Bohr Institute, Copenhagen University

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