Biopolymers II: Simulations

Presentations

• Statistical Mechanics of Membrane Proteins.

  ORAL

  March 9, 2007, 6:12 AM – March 9, 2007, 6:24 AM

  Authors

  • Karim Wahba

    • UCLA

  • Robijn Bruinsma

    • UCLA
    • University of California, Los Angeles
    • Department of Physics and Astronomy, University of California at Los Angeles

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• Mechanical unfolding of proteins: reduction to a single-reaction coordinate unfolding potential, and an application of the Jarzynski Relation

  ORAL

  March 9, 2007, 6:24 AM – March 9, 2007, 6:36 AM

  Authors

  • Peter Olmsted

    • School of Physics and Astronomy \& Astbury Centre for Structural Biology, University of Leeds
    • University of Leeds

  • Daniel West

    • School of Physics and Astronomy \& Astbury Centre for Structural Biology, University of Leeds

  • Emanuele Paci

    • School of Physics and Astronomy \& Astbury Centre for Structural Biology, University of Leeds

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• Boundary Element Microhydrodynamics: Stagnation of flow in protein cavities

  ORAL

  March 9, 2007, 6:36 AM – March 9, 2007, 6:48 AM

  Authors

  • Sergio Aragon

    • San Francisco State University

  • David Hahn

    • San Francisco State University

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• Electrostatic theory of viral self-assembly: Structure and Kinetics

  ORAL

  March 9, 2007, 6:48 AM – March 9, 2007, 7:00 AM

  Authors

  • Tao Hu

    • Department of Physics, University of Minnesota

  • Boris Shklovskii

    • Department of Physics, University of Minnesota

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• Electrophoresis of DNA on a disordered two-dimensional substrate

  ORAL

  March 9, 2007, 7:00 AM – March 9, 2007, 7:12 AM

  Authors

  • Cynthia J. Olson Reichhardt

    • Theoretical Division, Los Alamos National Laboratory
    • Los Alamos National Laboratory

  • Charles Reichhardt

    • Theoretical Division, Los Alamos National Laboratory
    • Los Alamos National Laboratory

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• Shape of DNA in a box

  ORAL

  March 9, 2007, 7:12 AM – March 9, 2007, 7:24 AM

  Authors

  • Ya Liu

    • Brandeis University

  • Bulbul Chakraborty

    • Brandeis University

  • Jane' Kondev

    • Brandeis University

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• Polymer dynamics in a tight squeeze

  ORAL

  March 9, 2007, 7:24 AM – March 9, 2007, 7:36 AM

  Authors

  • Jeremy Schmit

    • Brandeis University

  • Ercan Kamber

    • Brandeis University

  • Joshua Kalb

    • Brandeis University

  • Bulbul Chakraborty

    • Brandeis University

  • Jane' Kondev

    • Brandeis University

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• $\lambda$-DNA thermal migration in a microchannel

  ORAL

  March 9, 2007, 7:36 AM – March 9, 2007, 7:48 AM

  Authors

  • Jennifer Kreft

    • Institute of Physics, Academia Sinica, Taipei, Taiwan

  • Yeng-Long Chen

    • Institute of Physics and Research Center for Applied Science, Academia Sinica, Taipei, Taiwan

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• Force-extension relation of DNA-histone complexes

  ORAL

  March 9, 2007, 7:48 AM – March 9, 2007, 8:00 AM

  Authors

  • A.J. Levine

  • Mark L. Henle

    • Department of Chemistry and Biochemistry, University of California, Los Angeles

  • Tom Chou

    • Department of Biomathematics, University of California, Los Angeles

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• Monitoring the Bending Stiffness of DNA

  ORAL

  March 9, 2007, 8:00 AM – March 9, 2007, 8:12 AM

  Authors

  • Chongli Yuan

    • Cornell University

  • Xiongwen Lou

    • Cornell University

  • Elizabeth Rhoades

    • Cornell University

  • Huimin Chen

    • Cornell University

  • Lynden Archer

    • Cornell University

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• Validity of the bead-spring model for describing the linear viscoelastic properties of single-strand DNA under strongly denaturing conditions

  ORAL

  March 9, 2007, 8:12 AM – March 9, 2007, 8:24 AM

  Authors

  • Semant Jain

    • University of Michigan

  • Ronald Larson

    • University of Michigan

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• Dynamics of particles with key-lock interactions

  ORAL

  March 9, 2007, 8:24 AM – March 9, 2007, 8:36 AM

  Authors

  • Nicholas Licata

    • University of Michigan

  • Alexei Tkachenko

    • University of Michigan

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• Molecular Dynamics Simulation of semi-flexible filament assembly

  ORAL

  March 9, 2007, 8:36 AM – March 9, 2007, 8:48 AM

  Authors

  • Lam T. Nguyen

    • Florida State Univ.

  • Qi Wang

  • Ziyad Muslimani

  • Linda S. Hirst

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• Ion condensation near patterned surfaces

  ORAL

  March 9, 2007, 8:48 AM – March 9, 2007, 9:00 AM

  Authors

  • Sharon Loverde

  • Monica Olvera de la Cruz

  • Yury Velichko

  • Francisco Solis

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