Focus Session: Biological Networks

Presentations

• Synthetic Gene Networks: \textit{De novo constructs -- in numero} descriptions

  COFFEE_KLATCH · Invited

  March 5, 2007, 12:30 PM – March 5, 2007, 1:06 PM

  Authors

  • Jeff Hasty

    • Department of Bioengineering, University of California, San Diego

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• Origin of Modularity in Recombination Evolution

  ORAL

  March 5, 2007, 1:06 PM – March 5, 2007, 1:18 PM

  Authors

  • Jun Sun

    • Rice University

  • Michael Deem

    • Rice University

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• Dynamic network analysis of protein interactions

  ORAL

  March 5, 2007, 1:18 PM – March 5, 2007, 1:30 PM

  Authors

  • Eivind Almaas

    • Lawrence Livermore National Laboratory
    • Lawrence Livermore Natl Lab

  • Joya Deri

    • Lawrence Livermore Natl Lab and Stanford University

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• Growth induced instability in metabolic networks

  ORAL

  March 5, 2007, 1:30 PM – March 5, 2007, 1:42 PM

  Authors

  • Sidhartha Goyal

    • Joseph Henry Laboratories of Physics, Princeton University

  • Ned Wingreen

    • Princeton University
    • Department of Molecule Biology, Princeton University
    • Department of Molecular Biology, Princeton University

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• Emergent Criticality from Co-evolution in Random Boolean Networks

  ORAL

  March 5, 2007, 1:42 PM – March 5, 2007, 1:54 PM

  Authors

  • Min Liu

    • Department of Physics, University of Houston

  • Kevin E. Bassler

    • University of Houston
    • The University of Houston
    • Department of Physics, University of Houston

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• Protein-Protein interaction networks: why static MpK model works and preferential attachment does not

  ORAL

  March 5, 2007, 1:54 PM – March 5, 2007, 2:06 PM

  Authors

  • Jingshan Zhang

    • Harvard University

  • Eugene Shakhnovich

    • Harvard University

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• A closer look at activity in metabolic networks

  ORAL

  March 5, 2007, 2:06 PM – March 5, 2007, 2:18 PM

  Authors

  • Natali Gulbahce

    • Los Alamos National Laboratory

  • Takashi Nishikawa

    • Southern Methodist University

  • Adilson E. Motter

    • Northwestern University

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• Stochastic Chemical Kinetics in Biochemical Reaction Networks.

  ORAL

  March 5, 2007, 2:18 PM – March 5, 2007, 2:30 PM

  Authors

  • Garegin Papoian

    • Univ. of North Carolina at Chapel Hill
    • The University of North Carolina at Chapel Hill

  • Yueheng Lan

    • The University of North Carolina at Chapel Hill

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• Noise propagation in combined cellular control motifs

  ORAL

  March 5, 2007, 2:30 PM – March 5, 2007, 2:42 PM

  Authors

  • Cheol-Min Ghim

  • Eivind Almaas

    • Lawrence Livermore National Laboratory
    • Lawrence Livermore Natl Lab

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• Stochastic effects in reaction networks

  ORAL

  March 5, 2007, 2:42 PM – March 5, 2007, 2:54 PM

  Authors

  • Aryeh Warmflash

    • University of Chicago

  • Aaron Dinner

    • University of Chicago

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• Universal patterns in the behavior of complex systems: from relaxation in fractal networks to distribution of income

  ORAL

  March 5, 2007, 2:54 PM – March 5, 2007, 3:06 PM

  Authors

  • Valerica Raicu

    • University of Wisconsin-Milwaukee
    • Department of Physics and Department of Biological Sciences, University of Wisconsin, Milwaukee

  • Michael Stoneman

    • University of Wisconsin-Milwaukee

  • Russell Fung

    • University of Wisconsin-Milwaukee
    • Department of Physics and Department of Biological Sciences, University of Wisconsin, Milwaukee

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• Understanding Dynamic Patterns of NF-$\kappa $B Signaling: Derivation and Analysis of a Minimal Model through Sensitivity Analysis

  ORAL

  March 5, 2007, 3:06 PM – March 5, 2007, 3:18 PM

  Authors

  • Jaewook Joo

    • Sandia National Laboratories

  • Steve Plimpton

    • Sandia National Laboratories

  • Shawn Martin

    • Sandia National Laboratories

  • Laura Swiler

    • Sandia National Laboratories

  • Jean-Loup Faulon

    • Sandia National Laboratoris

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• Sloppy systems biology: tight predictions with loose parameters

  ORAL

  March 5, 2007, 3:18 PM – March 5, 2007, 3:30 PM

  Authors

  • James Sethna

    • LASSP, Cornell University
    • Laboratory of Atomic and Solid State Physics, Cornell University

  • Ryan Gutenkunst

    • Laboratory of Atomic and Solid State Physics, Cornell University

  • Joshua Waterfall

    • Laboratory of Atomic and Solid State Physics, Cornell University

  • Fergal Casey

    • Center for Applied Mathematics, Cornell University

  • Kevin Brown

    • Department of Molecular and Cellular Biology, Harvard University

  • Christopher Myers

    • Cornell University
    • Cornell Theory Center, Cornell University

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• A Physical Theory of the Competition that Allows HIV to Escape from the Immune System

  ORAL

  March 5, 2007, 3:30 PM – March 5, 2007, 3:42 PM

  Authors

  • Michael Deem

    • Rice University

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